083f37bdf9363744c53158faa23f3508 *DESCRIPTION
062c771e041c09377ba7d9ad28d040dd *NAMESPACE
4c5417f220a492f671c25e9ddad3786e *NEWS.md
e868e058180404835dcc8ad906790e08 *R/RcppExports.R
3aa3c75d47f81a9f3c549112d3d680c6 *R/TDApplied.R
68e5ae7e8007b85a4b09ea02248e00e3 *R/analyze_representatives.R
0150ac99dfdc0a24ce75a92568231ad7 *R/bootstrap.R
11c043e5c3989911490a63638daeb0df *R/convert.R
1985f912c297b562986b4f9cc4ae4932 *R/distance_calculations.R
67390469b858dd1033722de29c1e2ad4 *R/inference.R
7cbe0742f16008fdc15984675f77533b *R/kernel_calculations.R
1c07bfaf65ce0cd775e05e0e9166ee45 *R/machine_learning.R
0e89e63da0e34b907f4484a15b97e6e0 *R/plot.R
7e7ad8df30425d4a57367e9cf606bbfe *R/python_functions.R
6135e28cdf447d8ec2c67cf1186643e8 *R/rips_complexes.R
6d7eaf1b7f330d4248e42d0e2920c3d8 *R/utilities.R
139727d03d5ff2c09578f27d648ddc36 *R/zzz.R
f71da1ccf7b2906b2f874d931808d54b *README.md
453f53599175bdcccca9bbb28de50faf *build/partial.rdb
03d1d31ba446f5e7be1bda3c1912400c *build/vignette.rds
9fc8f71db8ab2b6027b69142858051da *exec/TDApplied_HCP.R
ccbbe80f0cd17e88a85a69f2d22a35eb *exec/benchmarking_and_vignette_figures.R
1aa3161217cb32e45699d822df31eb09 *exec/parallel_with_approximation.R
1232ff1d8fd3b7cfb00e5d74301a58b4 *inst/doc/HCP_analysis.R
b47a643a5b2c13f2958ee71695fa95bb *inst/doc/HCP_analysis.Rmd
07fa18466afa5f1fb375a72027d3fdad *inst/doc/HCP_analysis.html
fe56f477ce688ea99cbbd6b7c047e7e8 *inst/doc/ML_and_Inference.R
0be7de8be59e55c906ce91b33e4bea09 *inst/doc/ML_and_Inference.Rmd
e455649a3210838b3a36fb819f9253bd *inst/doc/ML_and_Inference.html
41fe79cfb6a708f5a4dc548de0b63d56 *inst/doc/Speed.R
311573c61d439a450a509ef439477566 *inst/doc/Speed.Rmd
8032194fad474d585e4a76c20d88b25e *inst/doc/Speed.html
4ae1ac2094113962bcad746d6a3b07d6 *inst/doc/comparing_calcs.R
4690f1dcac9ad20710efd861ff3b4d4f *inst/doc/comparing_calcs.Rmd
893968828bc4a9960801430d680041be *inst/doc/comparing_calcs.html
626b4b0711a752a2e99391b6adc45212 *inst/doc/personalized_analyses.R
fcfef6cd97e24c63db368bf916a1a4a0 *inst/doc/personalized_analyses.Rmd
77e371e98db9d3527480fdd02245a156 *inst/doc/personalized_analyses.html
57eb202e10c76500c09156b322e3fab6 *man/PyH.Rd
22a452c67c70bd3ee1f2e81e17669825 *man/TDApplied.Rd
e726807d148754456f3b070653ace646 *man/analyze_representatives.Rd
a362d2422a813f2edfb19e80f0723687 *man/bootstrap_persistence_thresholds.Rd
6759c2dba57b02925080e6bf4b200b96 *man/check_PyH_setup.Rd
84d5d9ec7ec27c2fc424c6d5b6a2e2eb *man/check_ripser.Rd
b7e3daac049d8cc2984001b70fcc7a7f *man/diagram_distance.Rd
4bd319a5a279f9edcf83050b39cfcb36 *man/diagram_kernel.Rd
f985a5799defde7aa1266e8894210f07 *man/diagram_kkmeans.Rd
e9f5d9a94576e9c306795a52c2344189 *man/diagram_kpca.Rd
6a4869c0ef4fa9ed950d92acabf6c5a6 *man/diagram_ksvm.Rd
310025a8a3f458248e38efdab4e4e8d3 *man/diagram_mds.Rd
89934a37c432a32f866b818c5eb25f7b *man/diagram_to_df.Rd
e691ef3284bf6b614af5e60009dbd106 *man/distance_matrix.Rd
0d982a9e010e3e2e99c3641a71f1650c *man/gram_matrix.Rd
8ff09e75a51d257548e1b2f7b7f530f8 *man/import_ripser.Rd
df8804bcd14aa42ce4bc31c878475b59 *man/independence_test.Rd
75fa7fa136f44d25c08efe45a7816727 *man/loss.Rd
9fb655e81bc0193db4f3704c15d7e2c5 *man/permutation_test.Rd
c3091d2642e3786aa306c42c9f16d7ff *man/plot_diagram.Rd
640a88717829dbbd6a16fab0b135d089 *man/plot_vr_graph.Rd
3fd1843ab44e9413ef9cb84cae6b9dda *man/predict_diagram_kkmeans.Rd
26d7170fca3c8f071879a02140d1007c *man/predict_diagram_kpca.Rd
5ce814e065b67c4ffdc553ddb15ff4d0 *man/predict_diagram_ksvm.Rd
e164c3e3f29d0cc4aeb695d510e1aa86 *man/vr_graphs.Rd
d11c97c7fd6d7350207966ef20dad158 *src/ANN.cpp
eacad9cca2c236a6fb04cf937d9450fa *src/ANN.h
1180ceec386c975a99b355b4af425e4c *src/ANNperf.h
686dae344a0b3dbabbde4637786021f2 *src/ANNx.h
df77892faa944b400db79598f8dedd91 *src/KCenterClustering.cpp
6b71646bdb5ec462732780a227126617 *src/KCenterClustering.h
7d46f4f41d3d086a38ab91e72d82e526 *src/Makevars.win
29b2f54c4b10097f1ccb78c10f26aedb *src/RcppExports.cpp
df342732e7e0a784e2c2142b4b222a8e *src/bd_fix_rad_search.cpp
19e35b44d646e602585f76965ca68359 *src/bd_pr_search.cpp
d36ff535a44b45fa5d39367754fe39cb *src/bd_search.cpp
fd172c9bf8fa4596e3d9aec596f15dfa *src/bd_tree.cpp
908b622900dac205e785ec1b1f9bcafe *src/bd_tree.h
3942a2eff288e087eca459daef8b3e9b *src/brute.cpp
4fe59be693d39078495fa95bb6f6cbbf *src/figtree.cpp
d86a568e63172792976a186cccda6f2e *src/figtree.h
7dbe014f987d087f114b1b5878be3da5 *src/figtree_internal.h
286fe5ea62f6a408b2a7904a32ae8ac9 *src/kd_dump.cpp
e87ff91e599627a2c74caa38b84c96c9 *src/kd_fix_rad_search.cpp
6a2b7b82ae832d05b1d9f3f28ca8edec *src/kd_fix_rad_search.h
440fc19c0575902debe0d6961592c5cf *src/kd_pr_search.cpp
221f9d9ddb58ca79d57872489069a908 *src/kd_pr_search.h
302ba64d06fe79dbf19389eebecaa48b *src/kd_search.cpp
2575a185e352c3b670303c7df2bec891 *src/kd_search.h
0b11ba38b64f9f96f2b756dd393313ba *src/kd_split.cpp
e8a4b953f0a1cb7ebf956292c40f47eb *src/kd_split.h
5c276c15a7f399c64fd225f6f418bc9d *src/kd_tree.cpp
5f3790573167d04fe4d954bde22f65bd *src/kd_tree.h
5b0b9230e93d645e7c321cd373c02eed *src/kd_util.cpp
c6c69141418482d4b64bf1f30ab52853 *src/kd_util.h
ed886a40d1d119dc1666b69954b748f5 *src/matrix.h
fd36889a5ab990a5d9c9bbd3dfd18a0f *src/perf.cpp
bc318d848d623dc1002c4ae0211d1ef7 *src/pr_queue.h
5442c976dc89a58e66cf085b10f27119 *src/pr_queue_k.h
7b1861b65cc62a92b2cd137489997a0b *tests/testthat.R
e677337c32118063632c66d4267fbaf7 *tests/testthat/test-MDS.R
3dd126cb5decc133d0a39403c707fd76 *tests/testthat/test-bootstrap.R
b9adc59e08dde0dcd07bda81b399fc07 *tests/testthat/test-convert.R
5ae669fa2a3688212ea08c684e3e344d *tests/testthat/test-distance.R
82d8e94e8b79eb643d7733391440bf63 *tests/testthat/test-inference.R
056c9f074a3b0f804ffe7bb877aaf136 *tests/testthat/test-kernel.R
a80b30aec02aa0bbd6fc364b4cc43d06 *tests/testthat/test-kmeans.R
14ec045d0dbc9088f68de07cc27e115b *tests/testthat/test-pca.R
e0920a5aae4589ced5318c5898bc81c7 *tests/testthat/test-plot.R
39c6b8dc0dc5a9ea137089f34867cc9b *tests/testthat/test-python.R
57387d20895ad7aeb551b10d12ca53cf *tests/testthat/test-representatives.R
f96ef06b10cef7c711047b6d7ba8ded4 *tests/testthat/test-rips.R
e95b2613a98797cfda9a915446a6b17e *tests/testthat/test-svm.R
193bcfaba32526929f0adb132b5791c6 *tests/testthat/test-utilities.R
b47a643a5b2c13f2958ee71695fa95bb *vignettes/HCP_analysis.Rmd
0be7de8be59e55c906ce91b33e4bea09 *vignettes/ML_and_Inference.Rmd
80506eb19ca73f6deeb19a4fde953a0f *vignettes/REFERENCES.bib
311573c61d439a450a509ef439477566 *vignettes/Speed.Rmd
a285eda9289a3428d5e1845702539f55 *vignettes/color_bar.png
4690f1dcac9ad20710efd861ff3b4d4f *vignettes/comparing_calcs.Rmd
fcfef6cd97e24c63db368bf916a1a4a0 *vignettes/personalized_analyses.Rmd
27f02cecda2a6cde78e4584923ff85be *vignettes/r_boxplot.png
a7050c3a9f902a460fed8dfe4a095a5b *vignettes/r_nodes.png
1e46b9ebdc5a0c829e7f81a27986cc02 *vignettes/rips_all.png
ed25f1dda97af1c01eb9e63ab5cf0574 *vignettes/rips_cycle.png
4fd364e0353889f5eb7b0334c2656727 *vignettes/rips_respiratory.png
fb625404e2da5f93e891096c4e4baf92 *vignettes/rips_secondary.png
90ec1d865c457d3dd5374800760f5b23 *vignettes/rips_task.png
c055f9aa6a27e4f6d036381f12bca0d1 *vignettes/theta_nodes.png
4df5a22d7dd703f1c7a5d030e3408dbd *vignettes/topology_behavior.png
