872d956ff939402137a86cb8174d3118 *DESCRIPTION
a75b774e13e342cfad972dbeff9c0f95 *LICENSE
40157331c429feeeb93c5acbc7f1ca0c *NAMESPACE
3dad39d2c2c33b4b070d807ddde194ea *NEWS.md
443dd603911fbb00de25c4e788a23605 *R/cluster_blast.R
7146b5eccd89866f3dc6061f94785b0c *R/data.R
fb6b9646bd8b95b4b4a3f3bf3d4bd36f *R/gene_alignment.R
f286c5b280ceac26810537daf7d58489 *R/gene_normalization.R
52438105c12ce908ecb67e323f586374 *R/geneviewer-shiny.R
5db5b4f1ea245174cd937ca49e789922 *R/geneviewer.R
67a14ff2bf404d746d5c74181fd98709 *R/mummer_alignment.R
e584cc86904301bea684f1bb6a7ccf71 *R/read_bed.R
f2edcb099af98e56e1be0e86c2a48bf0 *R/read_fasta.R
a87e21f961d40acb7da2e15b40fdd9f5 *R/read_genbank.R
2ac708d645b72e49c9f8047ca7e77c20 *R/read_gff.R
fe329714efd867b22c7b7de793ec8fc7 *R/transcript.R
cb1d93bacb45def8088c289191a939a9 *R/utils.R
3b841203327e427c4a1f2632ab2ea8e3 *README.md
c5c67d131fb2f09b44c7acf792a634eb *data/BRCA1_splice_variants.rda
0121bba68916fd2534837f8df235370a *data/erythromycin_BlastP.rda
3c75e9d583c15f6382a7a7fb73e95125 *data/erythromycin_cluster.rda
acdbe8781ebed966ca67864b4784c65d *data/hs_dystrophin_transcripts.rda
1148a37b484044f6a3fd1cfa1cf585c2 *data/human_hox_genes.rda
eaa15bdab59fd0bfe5338ab14f135524 *data/ophA_clusters.rda
2eb1c56ec2d604292c2ea84cdc1cb0b7 *inst/extdata/BGC0000001.gbk
61d9f3ded33091784346a02fd72abcfe *inst/extdata/BGC0000108.fasta
3cb57ec4e18f547b64be3b3e1b909f58 *inst/extdata/HQ113105.1.gff3
77c728087ce4f4c94a5796d73a762a0a *inst/htmlwidgets/geneviewer.yaml
2e786deb5149213c095f27c36a5c5550 *inst/htmlwidgets/geneviewerwidget.js
187f632d1293a2cfc41dddd594cf6c25 *inst/htmlwidgets/lib/D3-7.8.5/d3.min.js
bd9105ba51dccb7403a47ccaa3a5ce2e *inst/htmlwidgets/lib/FileSaver-2.0.4/FileSaver.min.js
0942c609ad57cc432f71e438ccab0db9 *inst/htmlwidgets/lib/geneviewer-0.1.10/Themes.js
b954e22f225e55eb88996c9f19009933 *inst/htmlwidgets/lib/geneviewer-0.1.10/geneviewer.js
d7530aa0b7587e627484c49fdf8f13f2 *inst/htmlwidgets/lib/html2canvas-1.4.1/html2canvas.min.js
8c4af801ebe07abdb2e2056675738187 *inst/htmlwidgets/lib/styles.css
1b09f548706eaee9beaddbb105fd9f1d *man/BRCA1_splice_variants.Rd
5a5802c7a93fe865fa5bcbf51849e3c1 *man/GC_align.Rd
926752e90bf9a2fa827636f268c2a29e *man/GC_annotation.Rd
06b074ce668065eff05cc5189ebe242f *man/GC_chart.Rd
a7a24e60e062e422ed829b4d9ae2bb02 *man/GC_cluster.Rd
8104c350d71dee5768b2eda9d3249bb9 *man/GC_clusterFooter.Rd
0036299d9c67924891746db3add24ef2 *man/GC_clusterLabel.Rd
e7ebb6b4fcc43cd35c92935a2004ebfe *man/GC_clusterTitle.Rd
c6485de5dfc4f1b44633d94f3c3b1072 *man/GC_color.Rd
404b35f9783b3fe6f80a684a2c8959d8 *man/GC_coordinates.Rd
76fe466662d9c44cf67bb31f8d70ecdc *man/GC_genes.Rd
1830e982df038b88efe6fbdd06749bcd *man/GC_grid.Rd
22e47b2bebbb4e01ec2ca3b8af193cdb *man/GC_labels.Rd
65c2d3cd810060bbb8dc5f984cc33987 *man/GC_legend.Rd
c47afaae4de7070e148ad9b3117117fa *man/GC_links.Rd
7536130f8657eb79c9a0a6e7d57040bb *man/GC_normalize.Rd
8cbd8d50b2d36ef1c71337280161bb75 *man/GC_scale.Rd
4fd7f242793600baf56a1d088d076d7d *man/GC_scaleBar.Rd
47d43675c2a96622189a5120b775f2ad *man/GC_sequence.Rd
91f21abe4892e6d258a51254477b2576 *man/GC_title.Rd
52332dbcd5f60b5fd7fdb44c0067ac28 *man/GC_tooltip.Rd
78a8ed2b55d9a911d46d52038aac9bf7 *man/GC_trackMouse.Rd
bf588a0561226921cfcdd06d0d0b541d *man/GC_transcript.Rd
3c4306550a8444c8b64b8a77a6861f48 *man/erythromycin_BlastP.Rd
e91b70f2df8934277e85e4e452804ebb *man/erythromycin_cluster.Rd
cd00673ecc2b91c306bb2fbb92837c00 *man/figures/BRCA1_splice_variants.png
9f18992a669d2986394f67d614a7f955 *man/figures/LacZ_operon.png
11cca15399fe543b467d195fe47a78ea *man/figures/MUMmer.png
26c2ec223d50a0c7c7950d3464b1eaa7 *man/figures/erythromycin_BlastP.png
e6bc36c7d9f5e55e70cddbad5aafdce1 *man/figures/erythromycin_cluster.png
f33556b11a67462e024443cf9240e19f *man/figures/erythromycin_link.png
f91fcfa29add23ec039f2316efab7ab0 *man/figures/favicon.ico
050b5bbdbd0768a2b70bfb9caab619a5 *man/figures/human_hox_genes.png
014f64980a45f4233198b5e58b2a1b47 *man/figures/logo.png
a07aa880e0d8b9f1fa22a379116230c7 *man/figures/ophA_clusters.png
da0c649ea29adeac9bd5a1d15923d676 *man/figures/ophA_gene_cluster.png
cf7c22eee9b961c0ad73a6e5cb81be8a *man/figures/ophA_gene_links.png
24fa4aabf3a8ad7bf169d5e8dcc80525 *man/gbk_features_to_df.Rd
60baac280194189644f696c65858c487 *man/genbank_to_fasta.Rd
b20751706753b888c451bd61f9cb505f *man/geneviewer-shiny.Rd
789543be933a3cadbf5a658182ad1bf5 *man/get_introns.Rd
15a638fe7415a9c90470f20cd85a6303 *man/hs_dystrophin_transcripts.Rd
dbcd57979fe40eaf7a46e1f776780111 *man/human_hox_genes.Rd
fac712931e53519e359e784c6c1ffbd9 *man/mummer_alignment.Rd
c444cc699d1a99f784ce72542a8218d5 *man/ophA_clusters.Rd
ff6a0964dc2f64ffdb86a4a2a0d2d008 *man/protein_blast.Rd
c227932a5d63211cd4791cc2052fa572 *man/read_bed.Rd
67dc158b59c384ff571baaa745f3127c *man/read_fasta.Rd
378f539f5c52b2538c41977e2d59b747 *man/read_gbk.Rd
435bf8e8fffbd4dc50dc958384fa8fcf *man/read_gff.Rd
146ee8f06cebe3fbea50d6143dd71e76 *man/reexports.Rd
759f4ee594b959443419113a36f4234c *tests/testthat.R
42fa9a9c1d243e93a018ed8d444db6a5 *tests/testthat/test-GC_chart.R
0be9e0829b1b35f36c2e6f11b603a35c *tests/testthat/test-load_data.R
