kts.pair                Calculation of the k top scoring pairs.
ktspair-package         Computation of the k-TSP
ktspcalc                Compute the k top scoring pairs based on a gene
                        expression matrix and a group indicator vector.
ktspcalc2		The k-TSP with chosen pairs of genes
ktspdata                Simulated dataset of gene expressions in a
                        matrix form.
ktspplot                Graphical representation of ktsp objects
make.consecutive.int    Transform the group vector into a binary vector
plot.ktsp               Graphical representation of ktsp objects
predict.ktsp            Prediction using a ktsp object
print.ktsp              Print the results of the k-TSP
rank_na                 Rank the gene expression and Replace NA
ordertsp		Ordering of the pairs of genes
AUC.calc		Compute the AUC for a given curve (the area under the curve)
summary.ktsp            Summary of ktsp object
cv			Crossvalidation for the parameter k
cv2			Crossvalidation with chosen pairs of genes
bootstrap.ktsp		Bootstrap procedure for the k-TSP
bootstrap.graphic.ktsp	Graphical display of the bootstrap procedure
ROC.offset		This function creates a ROC object used by the function ROC.graphic() to plot a ROC curve of the method based on adding an 				offset on each pair of gene.
ROC.voting		This function creates a ROC object used by the function ROC.graphic.ktsp() to plot a ROC curve of the method based on cutoff 				on the majority voting system.
ROC.graphic.ktsp	This functions displays the results of the ROC curve obtained through the function ROC()

