Last updated on 2025-10-21 23:51:25 CEST.
| Package | NOTE |
|---|---|
| varitas | 13 |
Current CRAN status:
Version: 0.0.2
Check: Rd files
Result: NOTE
checkRd: (-1) get.miniseq.sample.files.Rd:15: Lost braces
15 | \item{file.suffix}{Regex expression for end of file name. For example, `file.suffix = '_S\\d{1,2}_.*_R1_.*'` will match R1 files.1 files.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.0.2
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
caller.overlap.venn.diagram.html:50:1 (caller.overlap.venn.diagram.Rd:12): Warning: missing </ul> before </div>
create.directories.html:50:1 (create.directories.Rd:12): Warning: missing </ul> before </div>
fix.lofreq.af.html:48:1 (fix.lofreq.af.Rd:10): Warning: missing </ul> before </div>
fix.varscan.af.html:47:1 (fix.varscan.af.Rd:10): Warning: missing </ul> before </div>
plot.coverage.by.genome.order.html:47:1 (plot.coverage.by.genome.order.Rd:10): Warning: missing </ul> before </div>
run.alignment.sample.html:94:1 (run.alignment.sample.Rd:36): Warning: missing </ul> before </div>
run.filtering.txt.html:85:1 (run.filtering.txt.Rd:31): Warning: missing </ul> before </div>
run.lofreq.sample.html:102:1 (run.lofreq.sample.Rd:40): Warning: missing </ul> before </div>
run.muse.sample.html:102:1 (run.muse.sample.Rd:40): Warning: missing </ul> before </div>
run.mutect.sample.html:102:1 (run.mutect.sample.Rd:40): Warning: missing </ul> before </div>
run.target.qc.html:81:1 (run.target.qc.Rd:29): Warning: missing </ul> before </div>
run.target.qc.sample.html:85:1 (run.target.qc.sample.Rd:31): Warning: missing </ul> before </div>
run.vardict.sample.html:107:1 (run.vardict.sample.Rd:42): Warning: missing </ul> before </div>
run.varscan.sample.html:102:1 (run.varscan.sample.Rd:40): Warning: missing </ul> before </div>
save.variants.excel.html:60:1 (save.variants.excel.Rd:17): Warning: missing </ul> before </div>
sum.dp4.html:48:1 (sum.dp4.Rd:10): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc