Last updated on 2025-10-21 17:50:22 CEST.
| Package | ERROR | OK |
|---|---|---|
| inDAGO | 5 | 8 |
Current CRAN status: ERROR: 5, OK: 8
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(inDAGO)
The following packages are not installed: Rfastp.
To enable all the features of inDAGO, install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rfastp"))
>
> test_check("inDAGO")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inDAGO_shiny.R:4:3'): Shiny app is generated ───────────────────
Error in `inDAGO()`: The following packages are not installed: Rfastp.
To enable all the features of inDAGO install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rfastp"))
Backtrace:
▆
1. ├─testthat::expect_s3_class(inDAGO(), "shiny.appobj") at test-inDAGO_shiny.R:4:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inDAGO::inDAGO()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.2
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
BaseAverageQualityPlot.html:46:1 (BaseAverageQualityPlot.Rd:10): Warning: missing </ul> before </div>
BaseAverageQualityPlotly.html:46:1 (BaseAverageQualityPlotly.Rd:10): Warning: missing </ul> before </div>
BaseCompositionAreaChartPlot.html:46:1 (BaseCompositionAreaChartPlot.Rd:10): Warning: missing </ul> before </div>
BaseCompositionLinePlot.html:46:1 (BaseCompositionLinePlot.Rd:10): Warning: missing </ul> before </div>
BaseQualityBoxplotPlot.html:46:1 (BaseQualityBoxplotPlot.Rd:10): Warning: missing </ul> before </div>
BulkAlignment.html:148:1 (BulkAlignment.Rd:72): Warning: missing </ul> before </div>
CombinedAlignment.html:143:1 (CombinedAlignment.Rd:69): Warning: missing </ul> before </div>
DEGsServerLogic.html:46:1 (DEGsServerLogic.Rd:10): Warning: missing </ul> before </div>
DEGsUserInterface.html:46:1 (DEGsUserInterface.Rd:10): Warning: missing </ul> before </div>
EDAServerLogic.html:46:1 (EDAServerLogic.Rd:10): Warning: missing </ul> before </div>
EDAUserInterface.html:46:1 (EDAUserInterface.Rd:10): Warning: missing </ul> before </div>
FilteringServerLogic.html:46:1 (FilteringServerLogic.Rd:10): Warning: missing </ul> before </div>
FilteringUserInterface.html:46:1 (FilteringUserInterface.Rd:10): Warning: missing </ul> before </div>
GCcontentDistributionPlot.html:46:1 (GCcontentDistributionPlot.Rd:10): Warning: missing </ul> before </div>
GCcontentDistributionPlotly.html:46:1 (GCcontentDistributionPlotly.Rd:10): Warning: missing </ul> before </div>
IndexingBulk.html:66:1 (IndexingBulk.Rd:20): Warning: missing </ul> before </div>
IndexingBulkServerLogic.html:46:1 (IndexingBulkServerLogic.Rd:10): Warning: missing </ul> before </div>
IndexingBulkUserInterface.html:46:1 (IndexingBulkUserInterface.Rd:10): Warning: missing </ul> before </div>
IndexingComb.html:103:1 (IndexingComb.Rd:45): Warning: missing </ul> before </div>
IndexingCombinedServerLogic.html:46:1 (IndexingCombinedServerLogic.Rd:10): Warning: missing </ul> before </div>
IndexingCombinedUserInterface.html:46:1 (IndexingCombinedUserInterface.Rd:10): Warning: missing </ul> before </div>
IndexingSequentialParallel.html:73:1 (IndexingSequentialParallel.Rd:27): Warning: missing </ul> before </div>
IndexingSequentialProgressive.html:83:1 (IndexingSequentialProgressive.Rd:33): Warning: missing </ul> before </div>
IndexingSequentialServerLogic.html:46:1 (IndexingSequentialServerLogic.Rd:10): Warning: missing </ul> before </div>
IndexingSequentialUserInterface.html:46:1 (IndexingSequentialUserInterface.Rd:10): Warning: missing </ul> before </div>
QualityCheckAnalysis.html:73:1 (QualityCheckAnalysis.Rd:27): Warning: missing </ul> before </div>
SequenceLengthDistributionPlot.html:46:1 (SequenceLengthDistributionPlot.Rd:10): Warning: missing </ul> before </div>
SequenceLengthDistributionPlotly.html:46:1 (SequenceLengthDistributionPlotly.Rd:10): Warning: missing </ul> before </div>
SequentialAlignment.html:153:1 (SequentialAlignment.Rd:75): Warning: missing </ul> before </div>
SummarizationServerLogic.html:46:1 (SummarizationServerLogic.Rd:10): Warning: missing </ul> before </div>
SummarizationUserInterface.html:46:1 (SummarizationUserInterface.Rd:10): Warning: missing </ul> before </div>
WorkflowServerLogic.html:46:1 (WorkflowServerLogic.Rd:10): Warning: missing </ul> before </div>
WorkflowUserInterface.html:46:1 (WorkflowUserInterface.Rd:10): Warning: missing </ul> before </div>
counting_Reads.html:46:1 (counting_Reads.Rd:10): Warning: missing </ul> before </div>
mappingBulkServerLogic.html:46:1 (mappingBulkServerLogic.Rd:10): Warning: missing </ul> before </div>
mappingBulkUserInterface.html:46:1 (mappingBulkUserInterface.Rd:10): Warning: missing </ul> before </div>
mappingCombinedServerLogic.html:46:1 (mappingCombinedServerLogic.Rd:10): Warning: missing </ul> before </div>
mappingCombinedUserInterface.html:46:1 (mappingCombinedUserInterface.Rd:10): Warning: missing </ul> before </div>
mappingSequentialServerLogic.html:46:1 (mappingSequentialServerLogic.Rd:10): Warning: missing </ul> before </div>
mappingSequentialUserInterface.html:46:1 (mappingSequentialUserInterface.Rd:10): Warning: missing </ul> before </div>
qualityControlServerLogic.html:46:1 (qualityControlServerLogic.Rd:10): Warning: missing </ul> before </div>
qualityControlUserInterface.html:46:1 (qualityControlUserInterface.Rd:10): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(inDAGO)
The following packages are not installed: Rfastp.
To enable all the features of inDAGO, install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rfastp"))
>
> test_check("inDAGO")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inDAGO_shiny.R:4:3'): Shiny app is generated ───────────────────
Error in `inDAGO()`: The following packages are not installed: Rfastp.
To enable all the features of inDAGO install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rfastp"))
Backtrace:
▆
1. ├─testthat::expect_s3_class(inDAGO(), "shiny.appobj") at test-inDAGO_shiny.R:4:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inDAGO::inDAGO()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/40s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(inDAGO)
The following packages are not installed: Rfastp.
To enable all the features of inDAGO, install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rfastp"))
>
> test_check("inDAGO")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inDAGO_shiny.R:4:3'): Shiny app is generated ───────────────────
Error in `inDAGO()`: The following packages are not installed: Rfastp.
To enable all the features of inDAGO install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rfastp"))
Backtrace:
▆
1. ├─testthat::expect_s3_class(inDAGO(), "shiny.appobj") at test-inDAGO_shiny.R:4:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inDAGO::inDAGO()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(inDAGO)
The following packages are not installed: Rsubread, Rfastp, HTSFilter.
To enable all the features of inDAGO, install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rsubread", "Rfastp", "HTSFilter"))
>
> test_check("inDAGO")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inDAGO_shiny.R:4:3'): Shiny app is generated ───────────────────
Error in `inDAGO()`: The following packages are not installed: Rsubread, Rfastp, HTSFilter.
To enable all the features of inDAGO install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rsubread", "Rfastp", "HTSFilter"))
Backtrace:
▆
1. ├─testthat::expect_s3_class(inDAGO(), "shiny.appobj") at test-inDAGO_shiny.R:4:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inDAGO::inDAGO()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'Rfastp', 'Rsubread'
Flavor: r-oldrel-macos-x86_64
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(inDAGO)
The following packages are not installed: Rsubread, Rfastp.
To enable all the features of inDAGO, install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rsubread", "Rfastp"))
>
> test_check("inDAGO")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-inDAGO_shiny.R:4:3'): Shiny app is generated ───────────────────
Error in `inDAGO()`: The following packages are not installed: Rsubread, Rfastp.
To enable all the features of inDAGO install with:
if (!requireNamespace('BiocManager', quietly=TRUE))
install.packages('BiocManager')
BiocManager::install(c("Rsubread", "Rfastp"))
Backtrace:
▆
1. ├─testthat::expect_s3_class(inDAGO(), "shiny.appobj") at test-inDAGO_shiny.R:4:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─inDAGO::inDAGO()
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64