Last updated on 2025-10-21 23:51:36 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CorMID | 13 | ||
| CorrectOverloadedPeaks | 13 | ||
| eCerto | 1 | 1 | 11 |
| HiResTEC | 13 | ||
| InterpretMSSpectrum | 13 | ||
| IsoCor | 13 | ||
| MetabolomicsBasics | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 1, OK: 11
Version: 0.8.5
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
eCerto_R6Class.html:174:1 (eCerto_R6Class.Rd:133): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:180:1 (eCerto_R6Class.Rd:137): Warning: <h5> anchor "Arguments" already defined
eCerto_R6Class.html:193:1 (eCerto_R6Class.Rd:144): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:210:1 (eCerto_R6Class.Rd:153): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:216:1 (eCerto_R6Class.Rd:157): Warning: <h5> anchor "Arguments" already defined
eCerto_R6Class.html:231:1 (eCerto_R6Class.Rd:166): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:248:1 (eCerto_R6Class.Rd:175): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:254:1 (eCerto_R6Class.Rd:179): Warning: <h5> anchor "Arguments" already defined
eCerto_R6Class.html:271:1 (eCerto_R6Class.Rd:190): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:288:1 (eCerto_R6Class.Rd:199): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:294:1 (eCerto_R6Class.Rd:203): Warning: <h5> anchor "Arguments" already defined
eCerto_R6Class.html:307:1 (eCerto_R6Class.Rd:210): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:324:1 (eCerto_R6Class.Rd:219): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:330:1 (eCerto_R6Class.Rd:223): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:347:1 (eCerto_R6Class.Rd:232): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:353:1 (eCerto_R6Class.Rd:236): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:370:1 (eCerto_R6Class.Rd:245): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:378:1 (eCerto_R6Class.Rd:251): Warning: <h5> anchor "Arguments" already defined
eCerto_R6Class.html:391:1 (eCerto_R6Class.Rd:258): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:408:1 (eCerto_R6Class.Rd:267): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:414:1 (eCerto_R6Class.Rd:271): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:431:1 (eCerto_R6Class.Rd:280): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:437:1 (eCerto_R6Class.Rd:284): Warning: <h5> anchor "Arguments" already defined
eCerto_R6Class.html:450:1 (eCerto_R6Class.Rd:291): Warning: <h5> anchor "Returns" already defined
eCerto_R6Class.html:467:1 (eCerto_R6Class.Rd:300): Warning: <h5> anchor "Usage" already defined
eCerto_R6Class.html:473:1 (eCerto_R6Class.Rd:304): Warning: <h5> anchor "Arguments" already defined
run_app.html:81:1 (run_app.Rd:37): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.8.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/43s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eCerto)
>
> # setting this variable will suppress most eCerto message calls
> Sys.setenv("GOLEM_CONFIG_ACTIVE"="default")
>
> ## run all tests similar to Ctrl+Shift+T in RStudio
> # testthat::test_check(package = "eCerto", reporter=c("minimal", "location"))
>
> ## check for the code covered by test functions
> # x <- covr::package_coverage(quiet = FALSE, function_exclusions = "page_*")
> # covr::zero_coverage(x = x)
> # covr::function_coverage(fun = eCerto:::app_server)
> # covr::function_coverage(fun = eCerto:::list2rv, code = source("tests/testthat/test-list2rv.R"))
>
> ## tests with snaps fail upon "RCHECK" while being successful in "test_check"
> ## setting R_TESTS avoids this problem
> Sys.setenv(R_TESTS="")
>
> ## run all tests
> # testthat::test_dir(path = "./tests/testthat")
> testthat::test_dir(path = "./testthat")
✔ | F W S OK | Context
⠏ | 0 | ExcelUpload
⠋ | 1 | ExcelUpload
⠸ | 4 | ExcelUpload
✔ | 4 | ExcelUpload [1.5s]
⠏ | 0 | RData_export
✔ | 2 | RData_export
⠏ | 0 | Rdata_import
⠋ | 1 | Rdata_import
⠇ | 9 | Rdata_import
⠋ | 11 | Rdata_import
✔ | 12 | Rdata_import
⠏ | 0 | app_inits
✔ | 3 | app_inits
⠏ | 0 | app_utils
⠙ | 2 | app_utils
⠦ | 7 | app_utils
✔ | 13 | app_utils
⠏ | 0 | certification
⠋ | 1 | certification
✔ | 2 | certification [1.0s]
⠏ | 0 | fnc_CertValPlot
⠸ | 1 3 | fnc_CertValPlot
✔ | 1 3 | fnc_CertValPlot
⠏ | 0 | fnc_assert_col
✔ | 9 | fnc_assert_col
⠏ | 0 | fnc_calc_time_diff
✔ | 6 | fnc_calc_time_diff
⠏ | 0 | fnc_check_fmt_Vdata
✔ | 1 | fnc_check_fmt_Vdata
⠏ | 0 | fnc_digits_DIN1333
✔ | 1 | fnc_digits_DIN1333
⠏ | 0 | fnc_flt_Vdata
✔ | 5 | fnc_flt_Vdata
⠏ | 0 | fnc_get_local_file
✔ | 7 | fnc_get_local_file
⠏ | 0 | fnc_plot_lts_data
⠧ | 1 7 | fnc_plot_lts_data
✔ | 2 7 | fnc_plot_lts_data
⠏ | 0 | fnc_prepFigS1
✔ | 4 | fnc_prepFigS1
⠏ | 0 | fnc_prepFigS2
✔ | 6 | fnc_prepFigS2
⠏ | 0 | fnc_prepFigS3
✔ | 1 | fnc_prepFigS3
⠏ | 0 | fnc_prepFigV2
✔ | 1 0 | fnc_prepFigV2
⠏ | 0 | fnc_prepFigV3
✔ | 1 0 | fnc_prepFigV3
⠏ | 0 | fnc_prepTabC0
✔ | 3 | fnc_prepTabC0
⠏ | 0 | fnc_prepTabC1
⠙ | 2 | fnc_prepTabC1
✔ | 3 | fnc_prepTabC1
⠏ | 0 | fnc_prepTabC2
✔ | 4 | fnc_prepTabC2
⠏ | 0 | fnc_prepTabH1
✔ | 10 | fnc_prepTabH1
⠏ | 0 | fnc_read_lts_input
✔ | 4 | fnc_read_lts_input
⠏ | 0 | fnc_read_xlsx
⠧ | 8 | fnc_read_xlsx
✔ | 10 | fnc_read_xlsx
⠏ | 0 | fnc_read_zenodo
⠋ | 1 0 | fnc_read_zenodo
⠙ | 1 1 0 | fnc_read_zenodo
⠼ | 3 1 1 | fnc_read_zenodo
✖ | 3 1 1 | fnc_read_zenodo [32.1s]
────────────────────────────────────────────────────────────────────────────────
Warning ('test-fnc_read_zenodo.R:5:7'): read_zenodo works
Sorry, could not find this Zenodo ID. :/
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-fnc_read_zenodo.R:4:5
2. │ └─base::withCallingHandlers(...)
3. └─eCerto:::read_zenodo(id = "8380870") at test-fnc_read_zenodo.R:5:7
4. └─eCerto:::warning_or_modal(x = "Sorry, could not find this Zenodo ID. :/")
Failure ('test-fnc_read_zenodo.R:7:5'): read_zenodo works
is.list(x) is not TRUE
`actual`: FALSE
`expected`: TRUE
Failure ('test-fnc_read_zenodo.R:8:5'): read_zenodo works
`x` has length 0, not length 6.
Failure ('test-fnc_read_zenodo.R:9:5'): read_zenodo works
"Certification" %in% names(x) is not TRUE
`actual`: FALSE
`expected`: TRUE
────────────────────────────────────────────────────────────────────────────────
⠏ | 0 | fnc_round_DIN1333
✔ | 1 | fnc_round_DIN1333
⠏ | 0 | fnc_steyx
✔ | 6 | fnc_steyx
⠏ | 0 | fnc_styleTabC0
⠋ | 1 | fnc_styleTabC0
✔ | 5 | fnc_styleTabC0
⠏ | 0 | fnc_styleTabC1
⠋ | 1 | fnc_styleTabC1
✔ | 1 | fnc_styleTabC1
⠏ | 0 | fnc_styleTabC2
✔ | 1 | fnc_styleTabC2
⠏ | 0 | fnc_styleTabH1
✔ | 5 | fnc_styleTabH1
⠏ | 0 | fnc_styleTabH2
✔ | 3 | fnc_styleTabH2
⠏ | 0 | fnc_styleTabL1
✔ | 1 | fnc_styleTabL1
⠏ | 0 | help_the_user_modal
✔ | 1 0 | help_the_user_modal
⠏ | 0 | homogeneity
⠸ | 4 | homogeneity
⠼ | 5 | homogeneity
✔ | 5 | homogeneity
⠏ | 0 | list2rv
⠙ | 2 | list2rv
⠼ | 5 | list2rv
✔ | 5 | list2rv
⠏ | 0 | materialtabelle
⠋ | 1 | materialtabelle
✔ | 5 | materialtabelle
⠏ | 0 | mod_xlsx_range_select
⠋ | 1 | mod_xlsx_range_select
⠸ | 4 | mod_xlsx_range_select
⠴ | 6 | mod_xlsx_range_select
⠧ | 8 | mod_xlsx_range_select
✔ | 8 | mod_xlsx_range_select [1.2s]
⠏ | 0 | page_start
✔ | 1 0 | page_start
⠏ | 0 | reactiveClass
✔ | 8 | reactiveClass
⠏ | 0 | run_app
✔ | 1 0 | run_app
⠏ | 0 | stability
⠋ | 1 | stability
✔ | 1 | stability
⠏ | 0 | statistic_helper
⠇ | 9 | statistic_helper
✔ | 27 | statistic_helper
⠏ | 0 | validation
⠴ | 6 | validation
✔ | 1 11 | validation
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 41.3 s
── Skipped tests (9) ───────────────────────────────────────────────────────────
• On CRAN (9): 'test-fnc_CertValPlot.R:15:3', 'test-fnc_plot_lts_data.R:18:5',
'test-fnc_plot_lts_data.R:69:5', 'test-fnc_prepFigV2.R:7:5',
'test-fnc_prepFigV3.R:8:5', 'test-help_the_user_modal.R:2:3',
'test-page_start.R:6:5', 'test-run_app.R:5:5', 'test-validation.R:37:5'
── Failed tests ────────────────────────────────────────────────────────────────
Failure ('test-fnc_read_zenodo.R:7:5'): read_zenodo works
is.list(x) is not TRUE
`actual`: FALSE
`expected`: TRUE
Failure ('test-fnc_read_zenodo.R:8:5'): read_zenodo works
`x` has length 0, not length 6.
Failure ('test-fnc_read_zenodo.R:9:5'): read_zenodo works
"Certification" %in% names(x) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 3 | WARN 1 | SKIP 9 | PASS 214 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13