CRAN Package Check Results for Maintainer ‘Peter Carbonetto <peter.carbonetto at gmail.com>’

Last updated on 2025-10-21 11:54:10 CEST.

Package NOTE OK
EbayesThresh 13
ebnm 2 11
fastTopics 3 10
mashr 6 7
mixsqp 13
susieR 13
varbvs 13

Package EbayesThresh

Current CRAN status: OK: 13

Package ebnm

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1-42
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: coef.ebnm.html:51:1 (coef.ebnm.Rd:12): Warning: missing </ul> before </div> fitted.ebnm.html:53:1 (fitted.ebnm.Rd:12): Warning: missing </ul> before </div> print.ebnm.html:55:1 (print.ebnm.Rd:14): Warning: missing </ul> before </div> print.summary.ebnm.html:55:1 (print.summary.ebnm.Rd:14): Warning: missing </ul> before </div> residuals.ebnm.html:52:1 (residuals.ebnm.Rd:12): Warning: missing </ul> before </div> vcov.ebnm.html:51:1 (vcov.ebnm.Rd:12): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package fastTopics

Current CRAN status: NOTE: 3, OK: 10

Additional issues

clang-UBSAN gcc-UBSAN

Version: 0.7-30
Check: installed package size
Result: NOTE installed size is 14.8Mb sub-directories of 1Mb or more: data 7.2Mb doc 2.0Mb libs 5.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.7-30
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.6-192
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: data 3.7Mb libs 1.2Mb Flavor: r-oldrel-windows-x86_64

Version: 0.6-192
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavor: r-oldrel-windows-x86_64

Package mashr

Current CRAN status: NOTE: 6, OK: 7

Version: 0.2.79
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: compute_alt_loglik_from_matrix_and_pi.html:60:1 (compute_alt_loglik_from_matrix_and_pi.Rd:18): Warning: missing </ul> before </div> compute_loglik_from_matrix_and_pi.html:58:1 (compute_loglik_from_matrix_and_pi.Rd:16): Warning: missing </ul> before </div> compute_null_loglik_from_matrix.html:55:1 (compute_null_loglik_from_matrix.Rd:15): Warning: missing </ul> before </div> compute_vloglik_from_matrix_and_pi.html:58:1 (compute_vloglik_from_matrix_and_pi.Rd:16): Warning: missing </ul> before </div> make_names.html:53:1 (make_names.Rd:12): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.79
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘softImpute’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.79
Check: installed package size
Result: NOTE installed size is 8.3Mb sub-directories of 1Mb or more: libs 7.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package mixsqp

Current CRAN status: OK: 13

Package susieR

Current CRAN status: OK: 13

Package varbvs

Current CRAN status: OK: 13