Last updated on 2025-10-21 11:53:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 117.13 | 156.94 | 274.07 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 87.85 | 111.51 | 199.36 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 743.25 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 210.00 | 631.18 | 841.18 | WARN | |
| r-devel-windows-x86_64 | 1.1.0 | 132.00 | 184.00 | 316.00 | WARN | |
| r-patched-linux-x86_64 | 1.1.0 | 125.57 | 146.49 | 272.06 | WARN | |
| r-release-linux-x86_64 | 1.1.0 | 129.33 | 146.25 | 275.58 | WARN | |
| r-release-macos-arm64 | 1.1.0 | 116.00 | OK | |||
| r-release-macos-x86_64 | 1.1.0 | 48.00 | 137.00 | 185.00 | OK | |
| r-release-windows-x86_64 | 1.1.0 | 140.00 | 178.00 | 318.00 | WARN | |
| r-oldrel-macos-arm64 | 1.1.0 | 109.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 130.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 158.00 | 230.00 | 388.00 | WARN |
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.7 (7)’
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.0
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
family.communityPGLMM.html:53:1 (family.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
model.frame.communityPGLMM.html:62:1 (model.frame.communityPGLMM.Rd:22): Warning: missing </ul> before </div>
nobs.communityPGLMM.html:56:1 (nobs.communityPGLMM.Rd:15): Warning: missing </ul> before </div>
print.communityPGLMM.html:55:1 (print.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
print.pglmm_compare.html:55:1 (print.pglmm_compare.Rd:14): Warning: missing </ul> before </div>
simulate.communityPGLMM.html:66:1 (simulate.communityPGLMM.Rd:21): Warning: missing </ul> before </div>
summary.communityPGLMM.html:55:1 (summary.communityPGLMM.Rd:14): Warning: missing </ul> before </div>
summary.pglmm_compare.html:55:1 (summary.pglmm_compare.Rd:14): Warning: missing </ul> before </div>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:14: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-clang/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘clang version 21.1.2’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/data/gannet/ripley/R/packages/tests-devel/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.6/phyr.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
Flavor: r-devel-windows-x86_64
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
Flavor: r-patched-linux-x86_64
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/phyr.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
Flavor: r-release-linux-x86_64
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.5/phyr.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 14.2.0'
Flavor: r-release-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 12.1Mb
sub-directories of 1Mb or more:
doc 2.0Mb
libs 9.6Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
cor_phylo.cpp:76:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:81:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
cor_phylo.cpp:89:23: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
See 'd:/Rcompile/CRANpkg/local/4.4/phyr.Rcheck/00install.out' for details.
* used C++ compiler: 'g++.exe (GCC) 13.3.0'
Flavor: r-oldrel-windows-x86_64