Last updated on 2025-08-21 15:50:31 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 311.85 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 304.05 | OK | |||
| r-devel-windows-x86_64 | 0.1.0 | 9.00 | 192.00 | 201.00 | OK | |
| r-release-macos-arm64 | 0.1.0 | 123.00 | ERROR | |||
| r-release-macos-x86_64 | 0.1.0 | 154.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.1.0 | 213.00 | OK |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘readyomics-Ex.R’ failed
The error most likely occurred in:
> ### Name: mva
> ### Title: Multivariate analysis (PCA, PLS, OPLS)
> ### Aliases: mva
>
> ### ** Examples
>
> # PCA
> set.seed(123)
> mock_X <- matrix(rnorm(40),
+ nrow = 10,
+ dimnames = list(paste0("sample", 1:10),
+ paste0("feat", 1:4))
+ )
>
> sample_data <- data.frame(
+ sample_id = rownames(mock_X),
+ group = factor(rep(c("A", "B"), each = 5)),
+ batch = factor(rep(1:2, times = 5)),
+ row.names = rownames(mock_X),
+ stringsAsFactors = FALSE
+ )
>
> result <- mva(
+ X = mock_X,
+ sample_data = sample_data,
+ group_colour = "group",
+ group_shape = "batch",
+ plot_title = "Test PCA Plot",
+ predI = 2, # PCA: set components
+ verbose = FALSE
+ )
Error in loadNamespace(x) : there is no package called ‘ropls’
Calls: mva ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘readyomics.Rmd’ using rmarkdown
Quitting from readyomics.Rmd:176-185 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'ropls'
---
Backtrace:
▆
1. ├─readyomics::mva(...)
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'readyomics.Rmd' failed with diagnostics:
there is no package called 'ropls'
--- failed re-building ‘readyomics.Rmd’
SUMMARY: processing the following file failed:
‘readyomics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64