CRAN Package Check Results for Maintainer ‘Aleksandr Sahakyan <sahakyanlab at cantab.net>’

Last updated on 2025-10-21 17:50:35 CEST.

Package NOTE OK
kmeRtone 5 8
ROptimus 13

Package kmeRtone

Current CRAN status: NOTE: 5, OK: 8

Version: 1.0
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: Coordinate.html:356:1 (Coordinate.Rd:226): Warning: missing </ul> before </div> Coordinate.html:183:1 (Coordinate.Rd:123): Warning: <h5> anchor "Usage" already defined Coordinate.html:195:1 (Coordinate.Rd:133): Warning: <h5> anchor "Arguments" already defined Coordinate.html:219:1 (Coordinate.Rd:151): Warning: <h5> anchor "Returns" already defined Coordinate.html:238:1 (Coordinate.Rd:162): Warning: <h5> anchor "Usage" already defined Coordinate.html:244:1 (Coordinate.Rd:166): Warning: <h5> anchor "Arguments" already defined Coordinate.html:257:1 (Coordinate.Rd:173): Warning: <h5> anchor "Returns" already defined Coordinate.html:274:1 (Coordinate.Rd:182): Warning: <h5> anchor "Usage" already defined Coordinate.html:280:1 (Coordinate.Rd:186): Warning: <h5> anchor "Returns" already defined Coordinate.html:297:1 (Coordinate.Rd:195): Warning: <h5> anchor "Usage" already defined Coordinate.html:303:1 (Coordinate.Rd:199): Warning: <h5> anchor "Arguments" already defined Coordinate.html:316:1 (Coordinate.Rd:206): Warning: <h5> anchor "Returns" already defined Coordinate.html:333:1 (Coordinate.Rd:215): Warning: <h5> anchor "Usage" already defined Coordinate.html:339:1 (Coordinate.Rd:219): Warning: <h5> anchor "Arguments" already defined Kmer_Table.html:281:1 (Kmer_Table.Rd:152): Warning: missing </ul> before </div> Kmer_Table.html:107:1 (Kmer_Table.Rd:50): Warning: <h5> anchor "Usage" already defined Kmer_Table.html:123:1 (Kmer_Table.Rd:60): Warning: <h5> anchor "Usage" already defined Kmer_Table.html:139:1 (Kmer_Table.Rd:70): Warning: <h5> anchor "Usage" already defined Kmer_Table.html:177:1 (Kmer_Table.Rd:92): Warning: <h5> anchor "Usage" already defined Kmer_Table.html:183:1 (Kmer_Table.Rd:96): Warning: <h5> anchor "Arguments" already defined Kmer_Table.html:200:1 (Kmer_Table.Rd:107): Warning: <h5> anchor "Returns" already defined Kmer_Table.html:218:1 (Kmer_Table.Rd:117): Warning: <h5> anchor "Usage" already defined Kmer_Table.html:224:1 (Kmer_Table.Rd:121): Warning: <h5> anchor "Arguments" already defined Kmer_Table.html:241:1 (Kmer_Table.Rd:132): Warning: <h5> anchor "Returns" already defined Kmer_Table.html:258:1 (Kmer_Table.Rd:141): Warning: <h5> anchor "Usage" already defined Kmer_Table.html:264:1 (Kmer_Table.Rd:145): Warning: <h5> anchor "Arguments" already defined NCBI_Genome.html:270:1 (NCBI_Genome.Rd:161): Warning: missing </ul> before </div> NCBI_Genome.html:162:1 (NCBI_Genome.Rd:101): Warning: <h5> anchor "Usage" already defined NCBI_Genome.html:168:1 (NCBI_Genome.Rd:105): Warning: <h5> anchor "Arguments" already defined NCBI_Genome.html:184:1 (NCBI_Genome.Rd:115): Warning: <h5> anchor "Returns" already defined NCBI_Genome.html:201:1 (NCBI_Genome.Rd:124): Warning: <h5> anchor "Usage" already defined NCBI_Genome.html:207:1 (NCBI_Genome.Rd:128): Warning: <h5> anchor "Returns" already defined NCBI_Genome.html:224:1 (NCBI_Genome.Rd:137): Warning: <h5> anchor "Usage" already defined NCBI_Genome.html:230:1 (NCBI_Genome.Rd:141): Warning: <h5> anchor "Returns" already defined NCBI_Genome.html:247:1 (NCBI_Genome.Rd:150): Warning: <h5> anchor "Usage" already defined NCBI_Genome.html:253:1 (NCBI_Genome.Rd:154): Warning: <h5> anchor "Arguments" already defined UCSC_Genome.html:302:1 (UCSC_Genome.Rd:172): Warning: missing </ul> before </div> UCSC_Genome.html:139:1 (UCSC_Genome.Rd:79): Warning: <h5> anchor "Usage" already defined UCSC_Genome.html:145:1 (UCSC_Genome.Rd:83): Warning: <h5> anchor "Arguments" already defined UCSC_Genome.html:161:1 (UCSC_Genome.Rd:93): Warning: <h5> anchor "Returns" already defined UCSC_Genome.html:178:1 (UCSC_Genome.Rd:102): Warning: <h5> anchor "Usage" already defined UCSC_Genome.html:184:1 (UCSC_Genome.Rd:106): Warning: <h5> anchor "Returns" already defined UCSC_Genome.html:201:1 (UCSC_Genome.Rd:115): Warning: <h5> anchor "Usage" already defined UCSC_Genome.html:207:1 (UCSC_Genome.Rd:119): Warning: <h5> anchor "Arguments" already defined UCSC_Genome.html:222:1 (UCSC_Genome.Rd:128): Warning: <h5> anchor "Returns" already defined UCSC_Genome.html:239:1 (UCSC_Genome.Rd:137): Warning: <h5> anchor "Usage" already defined UCSC_Genome.html:245:1 (UCSC_Genome.Rd:141): Warning: <h5> anchor "Arguments" already defined UCSC_Genome.html:262:1 (UCSC_Genome.Rd:152): Warning: <h5> anchor "Returns" already defined UCSC_Genome.html:279:1 (UCSC_Genome.Rd:161): Warning: <h5> anchor "Usage" already defined UCSC_Genome.html:285:1 (UCSC_Genome.Rd:165): Warning: <h5> anchor "Arguments" already defined catHeader.html:46:1 (catHeader.Rd:10): Warning: missing </ul> before </div> countBaseComposition.html:60:1 (countBaseComposition.Rd:17): Warning: missing </ul> before </div> countDistribution.html:60:1 (countDistribution.Rd:16): Warning: missing </ul> before </div> system3.html:105:1 (system3.Rd:53): Warning: missing </ul> before </div> writeBED.html:50:1 (writeBED.Rd:12): Warning: missing </ul> before </div> writeVCF.html:59:1 (writeVCF.Rd:16): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0
Check: installed package size
Result: NOTE installed size is 5.4Mb sub-directories of 1Mb or more: libs 3.8Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package ROptimus

Current CRAN status: OK: 13