CRAN Package Check Results for Maintainer ‘Steve Rozen <steverozen at gmail.com>’

Last updated on 2025-10-21 17:50:36 CEST.

Package	NOTE	OK
ICAMS	4	9

Package ICAMS

Current CRAN status: NOTE: 4, OK: 9

Version: 3.0.11
Check: HTML version of manual
Result: NOTE Found the following HTML validation problems: CheckDBSClassInVCF.html:55:1 (CheckDBSClassInVCF.Rd:15): Warning: missing </ul> before </div> CheckSBSClassInVCF.html:55:1 (CheckSBSClassInVCF.Rd:15): Warning: missing </ul> before </div> ConvertICAMSCatalogToSigProSBS96.html:56:1 (ConvertICAMSCatalogToSigProSBS96.Rd:16): Warning: missing </ul> before </div> GenerateVCFsFromIndelSimpleFile1.html:55:1 (GenerateVCFsFromIndelSimpleFile1.Rd:15): Warning: missing </ul> before </div> GenerateVCFsFromIndelSimpleFiles.html:67:1 (GenerateVCFsFromIndelSimpleFiles.Rd:25): Warning: missing </ul> before </div> Plot96PartOfCompositeToPDF.html:54:1 (Plot96PartOfCompositeToPDF.Rd:14): Warning: missing </ul> before </div> ReadCatalogErrReturn.html:59:1 (ReadCatalogErrReturn.Rd:17): Warning: missing </ul> before </div> ReadCatalogInternal.html:83:1 (ReadCatalogInternal.Rd:34): Warning: missing </ul> before </div> Restaple1536.html:50:1 (Restaple1536.Rd:13): Warning: missing </ul> before </div> Restaple96.html:50:1 (Restaple96.Rd:13): Warning: missing </ul> before </div> StopIfCatalogTypeIllegal.html:46:1 (StopIfCatalogTypeIllegal.Rd:10): Warning: missing </ul> before </div> StopIfNrowIllegal.html:46:1 (StopIfNrowIllegal.Rd:10): Warning: missing </ul> before </div> StopIfRegionIllegal.html:46:1 (StopIfRegionIllegal.Rd:10): Warning: missing </ul> before </div> StopIfTranscribedRegionIllegal.html:46:1 (StopIfTranscribedRegionIllegal.Rd:10): Warning: missing </ul> before </div> TestPlotCatCOMPOSITE.html:64:1 (TestPlotCatCOMPOSITE.Rd:22): Warning: missing </ul> before </div> Unstaple1536.html:47:1 (Unstaple1536.Rd:11): Warning: missing </ul> before </div> Unstaple78.html:47:1 (Unstaple78.Rd:11): Warning: missing </ul> before </div> Unstaple96.html:47:1 (Unstaple96.Rd:11): Warning: missing </ul> before </div> WriteCat.html:68:1 (WriteCat.Rd:21): Warning: missing </ul> before </div> Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 3.0.11
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'BSgenome.Hsapiens.1000genomes.hs37d5', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64