Create simplex plots to visualize the similarity between
single-cells and selected clusters in a 1-/2-/3-simplex space.
Velocity information can be added as an additional layer.
See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
| Version: |
0.2.0 |
| Depends: |
stats, methods, grDevices, R (≥ 3.6) |
| Imports: |
cli, ggplot2, Matrix, plot3D, plotly, RColorBrewer, Rcpp, rlang, viridis |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
hdf5r, knitr, magick, patchwork, rmarkdown, Seurat, SeuratObject, SingleCellExperiment, SummarizedExperiment, testthat (≥ 3.0.0) |
| Published: |
2025-04-23 |
| DOI: |
10.32614/CRAN.package.CytoSimplex |
| Author: |
Yichen Wang  [aut,
cre],
Jialin Liu [aut],
Joshua Welch [cph] |
| Maintainer: |
Yichen Wang <wayichen at umich.edu> |
| License: |
GPL-3 |
| URL: |
https://welch-lab.github.io/CytoSimplex/,
https://github.com/welch-lab/CytoSimplex |
| NeedsCompilation: |
yes |
| Materials: |
README, NEWS |
| CRAN checks: |
CytoSimplex results |