Rename RGCCA classes and prefix them with “rgcca_”.
Merge documentation of print functions.
Merge documentation of plot functions.
Environment variable TEST_SNAPSHOTS must be set to “TRUE” for snapshots to be evaluated.
NEWS.md file to track changes to the
package.Many differences have been introduced since the last version
published on CRAN. We list below the most important ones: * The function
rgcca is now the main entry point of the package. * Many
well-known methods of the multiblock literature are now directly
available by setting the method argument in the
rgcca function. The list of methods can be found using the
available_methods function. * Arguments A and
C of the rgcca function are now deprecated.
blocks and connection should be used instead.
* Small utility functions are no longer exported. * Functions
rgcca_transform and rgcca_predict have been
added. They allow applying fitted RGCCA models to project new subjects
onto the learned subspaces and make predictions of response blocks using
caret predictive models. * Functions rgcca_cv
and rgcca_permutation have been added. They allow for
finding the best parameters of the models based on a cross-validation or
permutation criterion. * The function rgcca_bootstrap has
been added to evaluate the weights of a model using a bootstrap
procedure. * The function rgcca_stability has been added to
evaluate the stability of the variable selection performed by SGCCA. *
Print and plot functions have been added for the outputs of functions
rgcca, rgcca_cv,
rgcca_permutation, rgcca_bootstrap, and
rgcca_stability.