readPatients.xl(),
that table then is pushed to “other tables” in the CDM reference using
patientsCDM().generateTestTable() creates an Excel file with
sheets that correspond to OMOP-CDM tables.
patientsCDM() now accepts cdmName as
argument to allow for custom cdm name.
getEmptyCDM() returns an empty cdm object.
readPatients() now has a parameter to select either
Excel or CSV files as an input.
readPatients.xl() and readPatients.csv
are also exported functions for convenience.
graphCohort() provides a visualisation of cohort
timelines.
JSONS are saved in the testthat/testCases folder as default for better test self-containment.
Tested with MIMIC database.