R package for Bayesian Network Structure Learning from Data with Missing Values
Bayesian Networks are a powerful tool for probabilistic inference
among a set of variables, modeled using a directed acyclic graph.
However, one often does not have the network, but only a set of
observations, and wants to reconstruct the network that generated the
data. The bnstruct package provides objects and methods for
learning the structure and parameters of the network in various
situations, such as in presence of missing data, for which it is
possible to perform imputation (guessing the missing values, by
looking at the data). The package also contains methods for learning
using the Bootstrap technique. Finally, bnstruct, has a set
of additional tools to use Bayesian Networks, such as methods to perform
inference and interventions.
In particular, the absence of some observations in the dataset is a
very common situation in real-life applications such as biology or
medicine, but very few software around is devoted to address these
problems. bnstruct is developed mainly with the purpose of
filling this void.
The latest stable version of bnstruct is available on CRAN and can
be installed with
{r eval=FALSE} install.packages("bnstruct") from within an
R session.
The latest development version of bnstruct can be found
on GitHub here.
In order to install the package, it suffices to launch
R CMD INSTALL path/to/bnstruct from a terminal, or
make install from within the package source folder.
Being hosted on GitHub, it is also possible to use the
install_github tool from an R session:
{r eval=FALSE} library("devtools") install_github("sambofra/bnstruct")
For Windows platforms, a binary executable of the latest stable version is available on CRAN.
bnstruct requires R >= 3.5, and depends
on bitops, igraph, graph and
methods. Package Rgraphviz is requested in
order to plot graphs, but is not mandatory.
If you bnstruct in your work, please cite it as:
Alberto Franzin, Francesco Sambo, Barbara di Camillo. "bnstruct: an R package for Bayesian Network structure learning in the presence of missing data." Bioinformatics, 2017; 33 (8): 1250-1252; Oxford University Press.These information and a BibTeX entry can be found with
{r eval=FALSE} citation("bnstruct")