Bayesian Exposure-Response Analysis Tools

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Documentation for package ‘BayesERtools’ version 0.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_draws	Transform to 'draws' objects
as_draws.ermod	Transform to 'draws' objects
as_draws_array	Transform to 'draws' objects
as_draws_array.ermod	Transform to 'draws' objects
as_draws_df	Transform to 'draws' objects
as_draws_df.ermod	Transform to 'draws' objects
as_draws_list	Transform to 'draws' objects
as_draws_list.ermod	Transform to 'draws' objects
as_draws_matrix	Transform to 'draws' objects
as_draws_matrix.ermod	Transform to 'draws' objects
as_draws_rvars	Transform to 'draws' objects
as_draws_rvars.ermod	Transform to 'draws' objects
build_spec_coveff	Build specifications for covariate effect simulation/visualization
build_spec_coveff_one_variable	Customize specifications for covariate effect simulations/visualizations
calc_ersim_med_qi	Calculate median and quantile intervals from ersim object
coef.ermod	S3 methods for the classes 'ermod_*'
dev_ermod_bin	Develop linear ER model for binary or continuous endpoint
dev_ermod_bin_cov_sel	Perform covariate selection for linear ER model
dev_ermod_bin_emax	Develop Emax model for continuous and binary endpoint
dev_ermod_bin_emax_exp_sel	Exposure metrics selection for Emax models
dev_ermod_bin_exp_sel	Exposure metrics selection for linear ER models
dev_ermod_emax	Develop Emax model for continuous and binary endpoint
dev_ermod_emax_exp_sel	Exposure metrics selection for Emax models
dev_ermod_lin	Develop linear ER model for binary or continuous endpoint
dev_ermod_lin_cov_sel	Perform covariate selection for linear ER model
dev_ermod_lin_exp_sel	Exposure metrics selection for linear ER models
d_sim_binom_cov	Sample simulated data for exposure-response with binary endpoint.
d_sim_binom_cov_hgly2	Sample simulated data for exposure-response with binary endpoint.
d_sim_emax	Sample simulated data for Emax exposure-response models with covariates.
d_sim_lin	Sample simulated data for exposure-response with continuous endpoint using linear model.
edit_spec_coveff	Customize specifications for covariate effect simulations/visualizations
ermod_cov_sel_method	S3 methods for the classes 'ermod_bin_cov_sel'
ermod_exp_sel_method	S3 methods for the classes 'ermod_exp_sel'
ermod_method	S3 methods for the classes 'ermod_*'
ersim_method	S3 methods for the classes ersim_* and ersim_med_qi_*
eval_ermod	Evaluate exposure-response model prediction performance
extract_coef_exp_ci	Extract credible interval of the exposure coefficient
extract_data	Extract elements from S3 objects
extract_exp_sel_comp	Extract elements from S3 objects
extract_exp_sel_list_model	Extract elements from S3 objects
extract_kfold_loo	Run k-fold cross-validation
extract_method	Extract elements from S3 objects
extract_mod	Extract elements from S3 objects
extract_var_cov	Extract elements from S3 objects
extract_var_exposure	Extract elements from S3 objects
extract_var_resp	Extract elements from S3 objects
extract_var_selected	Extract elements from S3 objects
kfold	Run k-fold cross-validation
kfold.ermod	Run k-fold cross-validation
loo	Efficient approximate leave-one-out cross-validation (LOO)
loo.ermod	Efficient approximate leave-one-out cross-validation (LOO)
loo.ermod_bin_emax	Efficient approximate leave-one-out cross-validation (LOO)
loo.ermod_emax	Efficient approximate leave-one-out cross-validation (LOO)
plot.ermod_bin	S3 methods for the classes 'ermod_*'
plot.ermod_cov_sel	S3 methods for the classes 'ermod_bin_cov_sel'
plot.ermod_exp_sel	S3 methods for the classes 'ermod_exp_sel'
plot.ersim	S3 methods for the classes ersim_* and ersim_med_qi_*
plot.ersim_med_qi	S3 methods for the classes ersim_* and ersim_med_qi_*
plot_coveff	Visualize the covariate effects for ER model
plot_coveff.coveffsim	Visualize the covariate effects for ER model
plot_coveff.ermod	Visualize the covariate effects for ER model
plot_cov_sel	Plot variable selection performance
plot_er	Plot ER model simulations
plot_er.ermod	Plot ER model simulations
plot_er.ersim	Plot ER model simulations
plot_er.ersim_med_qi	Plot ER model simulations
plot_er_exp_sel	Plot exposure metric selection comparison
plot_er_gof	Default GOF plot for ER model
plot_submod_performance	Plot variable selection performance
plot_var_ranking	Plot variable selection performance
print.ermod	S3 methods for the classes 'ermod_*'
print.ermod_cov_sel	S3 methods for the classes 'ermod_bin_cov_sel'
print.ermod_exp_sel	S3 methods for the classes 'ermod_exp_sel'
print_coveff	Format the covariate effect simulation results for printing
prior_summary	Summarize the priors used for linear or linear logistic regression models
prior_summary.ermod	Summarize the priors used for linear or linear logistic regression models
p_direction	Probability of Direction (pd)
p_direction.ermod_bin	Probability of Direction (pd)
replace_spec_coveff	Customize specifications for covariate effect simulations/visualizations
sim_coveff	Perform simulation of covariate effects for ER model
sim_er	Simulate from ER model
sim_er_curve	Simulate from ER model at specified exposure values
sim_er_curve_marg	Calculate marginal expected response for specified exposure values
sim_er_new_exp	Simulate from ER model at specified exposure values
sim_er_new_exp_marg	Calculate marginal expected response for specified exposure values
summary.ermod	S3 methods for the classes 'ermod_*'