Gaussian Clinically Informative Visiting and Observation Processes in Electronic Health Record (EHR) Data

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Documentation for package ‘CIMEHR’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

available_comparison_methods	Available Methods for method_comparisons()
bootstrap	Bootstrap Confidence Intervals for Selected Model Fits
CIMEHR	Clinical Informative Missingness for Electronic Health Records (CIMEHR) - Joint Three-Stage Model
CIMEHR_timevarying_integral	Clinical Informative Missingness for Electronic Health Records (CIMEHR) with Gauss-Hermite (GH) Quadrature - Time-Varying Variant
CIMEHR_timevarying_ou	Clinical Informative Missingness for Electronic Health Records (CIMEHR) with Ornstein-Uhlenbeck (OU) Pairwise Composite Likelihood (PCL) Extension - Time-Varying Variant
coef.CIMEHR	Extract Coefficients from a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
coef.CIMEHR_timevarying_integral	Extract Coefficients from a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
coef.CIMEHR_timevarying_ou	Extract Coefficients from a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
coef_stage	Extract One or More Coefficients from a Fitted Method
confint.CIMEHR	Confidence Intervals for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients
confint.CIMEHR_timevarying_ou	Confidence Intervals for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients
EHRJoint	Joint Estimation for Electronic Health Record (EHR) Longitudinal Processes (EHRJoint)
extract_coefficient	Extract One or More Coefficients from a Fitted Method
Inverse_intensity_rate_ratio_balancing	Inverse Intensity Rate Ratio (IIRR) Estimator with Balancing Weights
Inverse_intensity_rate_ratio_weighting	Inverse Intensity Rate Ratio (IIRR) Weighting Estimator
Joint_modeling_visiting_and_longitudinal_Liang	Joint Model for Visiting and Longitudinal (JMVL) Processes with Informative Presence (IP) Adjustment (Liang's Method)
Linear_increment	Fit and Compare Multiple Methods
Linear_increment_IP	Linear Increment (LI) Imputation with Informative Presence (IP) Adjustment
Linear_mixed_model	Fit a Linear Mixed Model for Longitudinal Data
method_comparisons	Fit and Compare Multiple Methods
Multiple_imputation	Fit and Compare Multiple Methods
Multiple_imputation_IP	Multiple Imputation (MI) with Informative Presence (IP) Adjustment
Pairwise_likelihood	Pairwise Composite Likelihood (PCL) Generalized Linear Model (GLM) Estimation
print.CIMEHR	Print a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
print.cimehr_bootstrap	Print a Bootstrap Result
print.CIMEHR_timevarying_integral	Print a Clinical Informative Missingness for Electronic Health Records with Gauss-Hermite Quadrature (CIMEHR_timevarying_integral) Fit
print.CIMEHR_timevarying_ou	Print a Clinical Informative Missingness for Electronic Health Records with Ornstein-Uhlenbeck Pairwise Composite Likelihood (CIMEHR_timevarying_ou) Fit
print.EHRJoint	Print a Joint Estimation for Electronic Health Record (EHR) Longitudinal Processes (EHRJoint) Fit
print.Inverse_intensity_rate_ratio_balancing	Print an Inverse Intensity Rate Ratio (IIRR) Estimator with Balancing Weights Fit
print.Inverse_intensity_rate_ratio_weighting	Print an Inverse Intensity Rate Ratio (IIRR) Weighting Estimator Fit
print.Joint_modeling_visiting_and_longitudinal_Liang	Print a Joint Model for Visiting and Longitudinal (JMVL) Processes (Liang) Fit
print.Linear_increment_IP_result	Print a Linear Increment (LI) Imputation with Informative Presence (IP) Adjustment Fit
print.Linear_mixed_model_result	Print a Linear Mixed Model for Longitudinal Data Result
print.Multiple_imputation_IP_result	Print a Multiple Imputation (MI) with Informative Presence (IP) Adjustment Fit
print.Pairwise_likelihood	Print a Pairwise Composite Likelihood (PCL) Generalized Linear Model (Pairwise_likelihood) Fit
print.Summary_stat_result	Print a Summary-Statistic Regression for Longitudinal Data Result
sim_data_gen	Simulate Longitudinal Electronic Health Record (EHR) Data with Informative Visiting and Observation Processes
sim_ehr_data	Simulated Electronic Health Record (EHR) Longitudinal Data
summary.CIMEHR	Summarise a Clinical Informative Missingness for Electronic Health Records (CIMEHR) Fit
summary.cimehr_bootstrap	Summarise a Bootstrap Result
summary.CIMEHR_timevarying_integral	Summarise a Clinical Informative Missingness for Electronic Health Records with Gauss-Hermite Quadrature (CIMEHR_timevarying_integral) Fit
summary.CIMEHR_timevarying_ou	Summarise a Clinical Informative Missingness for Electronic Health Records with Ornstein-Uhlenbeck Pairwise Composite Likelihood (CIMEHR_timevarying_ou) Fit
summary.EHRJoint	Summarise a Joint Estimation for Electronic Health Record (EHR) Longitudinal Processes (EHRJoint) Fit
summary.Inverse_intensity_rate_ratio_balancing	Summarise an Inverse Intensity Rate Ratio (IIRR) Estimator with Balancing Weights Fit
summary.Inverse_intensity_rate_ratio_weighting	Summarise an Inverse Intensity Rate Ratio (IIRR) Weighting Estimator Fit
summary.Joint_modeling_visiting_and_longitudinal_Liang	Summarise a Joint Model for Visiting and Longitudinal (JMVL) Processes (Liang) Fit
summary.Linear_increment_IP_result	Summarise a Linear Increment (LI) Imputation with Informative Presence (IP) Adjustment Fit
summary.Linear_mixed_model_result	Summarise a Linear Mixed Model for Longitudinal Data Result
summary.Multiple_imputation_IP_result	Summarise a Multiple Imputation (MI) with Informative Presence (IP) Adjustment Fit
summary.Pairwise_likelihood	Summarise a Pairwise Composite Likelihood (PCL) Generalized Linear Model (Pairwise_likelihood) Fit
summary.Summary_stat_result	Summarise a Summary-Statistic Regression for Longitudinal Data Result
summary_observation	Summarise the Observation Process of a Fitted Method
summary_outcome	Summarise the Outcome Process of a Fitted Method
Summary_stat	Summary-Statistic Regression for Longitudinal Data
summary_visiting	Summarise the Visiting Process of a Fitted Method
vcov.CIMEHR	Variance-Covariance Matrix for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients
vcov.CIMEHR_timevarying_ou	Variance-Covariance Matrix for Clinical Informative Missingness for Electronic Health Records (CIMEHR) Outcome Coefficients