| collate_define_haplotypes | Collate define_haplotypes Lists |
| collate_haplotype_variants | Collate haplotype_variants Tables |
| define_haplotypes | Define Haplotypes |
| define_haplotypes_globally | Define Haplotypes Globally |
| haplotype_variants | Identify Haplotype Variants |
| haplotype_variants_global | Identify Haplotype Variants Globally |
| LD | Linkage Disequilibrium Matrix |
| vcf | Brassica napus genotype data in VCF format |