# Generated by roxygen2: do not edit by hand

S3method(write_shiny_app,Seurat)
S3method(write_shiny_app,default)
export(add_metadata)
export(assess_clustering_stability)
export(assess_feature_stability)
export(assess_nn_stability)
export(automatic_stability_assessment)
export(calculate_markers)
export(calculate_markers_shiny)
export(choose_stable_clusters)
export(consensus_cluster)
export(create_monocle_default)
export(create_monocle_from_clustassess)
export(create_monocle_from_clustassess_app)
export(create_seurat_object_default)
export(create_seurat_object_from_clustassess_app)
export(element_agreement)
export(element_consistency)
export(element_sim)
export(element_sim_elscore)
export(element_sim_matrix)
export(getNNmatrix)
export(get_clusters_from_clustassess_object)
export(get_highest_prune_param)
export(get_highest_prune_param_embedding)
export(get_nn_conn_comps)
export(marker_overlap)
export(merge_partitions)
export(pac_convergence)
export(pac_landscape)
export(plot_clust_hierarchical)
export(plot_clustering_overall_stability)
export(plot_clustering_per_value_stability)
export(plot_connected_comps_evolution)
export(plot_feature_overall_stability_boxplot)
export(plot_feature_overall_stability_incremental)
export(plot_feature_per_resolution_stability_boxplot)
export(plot_feature_per_resolution_stability_incremental)
export(plot_feature_stability_ecs_facet)
export(plot_feature_stability_mb_facet)
export(plot_k_n_partitions)
export(plot_k_resolution_corresp)
export(plot_n_neigh_ecs)
export(plot_n_neigh_k_correspondence)
export(server_comparisons)
export(server_dimensionality_reduction)
export(server_graph_clustering)
export(server_graph_construction)
export(server_landing_page)
export(server_sandbox)
export(ui_comparisons)
export(ui_dimensionality_reduction)
export(ui_graph_clustering)
export(ui_graph_construction)
export(ui_landing_page)
export(ui_sandbox)
export(weighted_element_consistency)
export(write_objects)
export(write_shiny_app)
importClassesFrom(Matrix,Matrix)
importFrom(dplyr,"%>%")
importFrom(foreach,
  "%do%",
  "%dopar%"
)
importFrom(methods,new)
importFrom(rlang,.data)
useDynLib(ClustAssess)
