| codeMarkers | Code and impute markers |
| createGData | S3 Class gData |
| dropsData | DROPS data sets |
| dropsMap | DROPS data sets |
| dropsMarkers | DROPS data sets |
| dropsPheno | DROPS data sets |
| gData | S3 Class gData |
| kinship | Functions for calculating kinship matrices |
| plot.gData | Plot function for the class 'gData' |
| plot.GWAS | Plot function for the class 'GWAS' |
| readPLINK | Read PLINK binary data |
| readVcf | Read variant call format data |
| runSingleTraitGwas | Perform single-trait GWAS |
| summary.gData | Summary function for the class 'gData' |
| summary.GWAS | Summary function for the class 'GWAS' |