R: Antedependence Models for Longitudinal Data

# Antedependence Models for Longitudinal Data

## Documentation for package ‘antedep’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

aic_cat | Akaike information criterion for fitted categorical AD models
aic_gau | Akaike information criterion for fitted Gaussian AD models
aic_inad | Akaike information criterion for fitted INAD models
Bell | The Bell distribution
bic_cat | Bayesian information criterion for fitted categorical AD models
bic_gau | Bayesian information criterion for fitted Gaussian AD models
bic_inad | Bayesian information criterion for fitted INAD models
bic_order_cat | BIC-based order selection for categorical AD models
bic_order_gau | BIC-based order selection for Gaussian AD models
bic_order_inad | BIC-based order selection for INAD models
bolus_inad | Morphine bolus analgesia counts
cattle_growth | Cattle growth data (Treatments A and B)
ci_cat | Confidence intervals for fitted categorical AD models
ci_gau | Confidence intervals for fitted Gaussian AD models
ci_inad | Confidence intervals for fitted INAD models
cochlear_implant | Cochlear implant speech recognition data
dbell | The Bell distribution
em_cat | EM algorithm for categorical AD model estimation
em_gau | EM algorithm for Gaussian AD model estimation
em_inad | EM algorithm for INAD model estimation
fit_cat | Fit categorical antedependence model by maximum likelihood
fit_gau | Fit Gaussian antedependence model by maximum likelihood
fit_inad | Fit INAD antedependence model by maximum likelihood
labor_force_cat | Labor force longitudinal categorical data (Table 1)
logL_cat | Log-likelihood for categorical AD models (with missing data support)
logL_gau | Log-likelihood for Gaussian AD models (with missing data support)
logL_inad | Log-likelihood for INAD models (with missing data support)
logL_inad_i | INAD log likelihood contribution at time i (no fixed effect)
partial_corr | Compute intervenor-adjusted partial correlation matrix
pbell | The Bell distribution
plot_prism | PRISM plot (Partial Residual Intervenor Scatterplot Matrix)
plot_profile | Profile plot (spaghetti plot) for longitudinal data
print.cat_ci | Print method for cat_ci objects
print.cat_fit | Print method for cat_fit objects
print.cat_lrt | Print method for cat_lrt objects
print.gau_bic_order | Print method for BIC order selection
print.gau_ci | Print method for AD confidence intervals
print.gau_contrast_test | Print method for AD contrast test
print.gau_fit | Print method for gau_fit objects
print.gau_homogeneity_test | Print method for AD homogeneity test
print.gau_mean_test | Print method for AD mean test
print.gau_order_test | Print method for AD order test
print.homogeneity_tests_inad | Print method for homogeneity_tests_inad
print.inad_ci | Print method for INAD confidence intervals
print.inad_fit | Print method for INAD model fits
print.test_homogeneity_inad | Print method for test_homogeneity_inad
qbell | The Bell distribution
race_100km | 100km race split-time data
rbell | The Bell distribution
run_homogeneity_tests_inad | Run all homogeneity tests for INAD
run_order_tests_cat | Run all pairwise order tests
run_stationarity_tests_cat | Run all stationarity-related tests for categorical AD
run_stationarity_tests_gau | Run all stationarity-related tests for Gaussian AD
run_stationarity_tests_inad | Run all stationarity-related tests for INAD
simulate_cat | Simulate categorical antedependence series
simulate_gau | Simulate Gaussian antedependence series
simulate_inad | Simulate INAD antedependence series
summary.cat_ci | Summary method for cat_ci objects
summary.gau_ci | Summary method for gau_ci objects
summary.inad_ci | Summary method for inad_ci objects
test_contrast_gau | Test linear hypotheses on the mean under antedependence
test_homogeneity_cat | Likelihood ratio test for homogeneity across groups (categorical AD data)
test_homogeneity_gau | Likelihood ratio test for homogeneity across groups (Gaussian AD data)
test_homogeneity_inad | Likelihood ratio test for homogeneity across groups (INAD data)
test_one_sample_gau | One-sample test for mean structure under antedependence
test_order_cat | Likelihood ratio test for antedependence order (categorical AD data)
test_order_gau | Likelihood ratio test for antedependence order (Gaussian AD data)
test_order_inad | Likelihood ratio test for antedependence order (INAD data)
test_stationarity_cat | Likelihood ratio test for stationarity (categorical AD data)
test_stationarity_gau | Likelihood ratio test for stationarity (Gaussian AD data)
test_stationarity_inad | Likelihood ratio test for stationarity (INAD data)
test_timeinvariance_cat | Likelihood ratio test for time-invariance (categorical data)
test_two_sample_gau | Two-sample test for equality of mean profiles under antedependence