ExpectedTime            Returns expected hitting time from state i to
                        state j
HigherOrderMarkovChain-class
                        Higher order Markov Chains class
absorptionProbabilities
                        Absorption probabilities
autoplot.markovchain    Plot a Markov chain with ggplot2
blanden                 Mobility between income quartiles
committorAB             Calculates committor of a markovchain object
                        with respect to set A, B
conditionalDistribution
                        'conditionalDistribution' of a Markov Chain
craigsendi              CD4 cells counts on HIV Infects between zero
                        and six month
createSequenceMatrix    Function to fit a discrete Markov chain
ctmc-class              Continuous time Markov Chains class
ctmcFit                 Function to fit a CTMC
expectedRewards         Expected Rewards for a markovchain
expectedRewardsBeforeHittingA
                        Expected first passage Rewards for a set of
                        states in a markovchain
firstPassage            First passage across states
firstPassageMultiple    function to calculate first passage
                        probabilities
fitHighOrderMultivarMC
                        Function to fit Higher Order Multivariate
                        Markov chain
fitHigherOrder          Functions to fit a higher order Markov chain
freq2Generator          Returns a generator matrix corresponding to
                        frequency matrix
generatorToTransitionMatrix
                        Function to obtain the transition matrix from
                        the generator
hittingProbabilities    Hitting probabilities for markovchain
holson                  Holson data set
hommc-class             An S4 class for representing High Order
                        Multivariate Markovchain (HOMMC)
ictmc-class             An S4 class for representing Imprecise
                        Continuous Time Markovchains
impreciseProbabilityatT
                        Calculating full conditional probability using
                        lower rate transition matrix
inferHyperparam         Function to infer the hyperparameters for
                        Bayesian inference from an a priori matrix or a
                        data set
is.CTMCirreducible      Check if CTMC is irreducible
is.TimeReversible       checks if ctmc object is time reversible
is.accessible           Verify if a state j is reachable from state i.
is.irreducible          Function to check if a Markov chain is
                        irreducible (i.e. ergodic)
is.regular              Check if a DTMC is regular
is.stochasticallyMonotone
                        Check if a Markov chain is stochastically
                        monotone
kullback                Example from Kullback and Kupperman Tests for
                        Contingency Tables
markovchain-class       Markov Chain class
markovchain-package     Easy Handling Discrete Time Markov Chains
markovchainList-class   Non homogeneus discrete time Markov Chains
                        class
markovchainListFit      markovchainListFit
markovchainSequence     Function to generate a sequence of states from
                        homogeneous Markov chains.
meanAbsorptionTime      Mean absorption time
meanFirstPassageTime    Mean First Passage Time for irreducible Markov
                        chains
meanNumVisits           Mean num of visits for markovchain, starting at
                        each state
meanRecurrenceTime      Mean recurrence time
multinomialConfidenceIntervals
                        A function to compute multinomial confidence
                        intervals of DTMC
name                    Method to retrieve name of markovchain object
name<-                  Method to set name of markovchain object
names,markovchain-method
                        Returns the states for a Markov chain object
noofVisitsDist          return a joint pdf of the number of visits to
                        the various states of the DTMC
ones                    Returns an Identity matrix
period                  Various function to perform structural analysis
                        of DTMC
predictHommc            Simulate a higher order multivariate
                        markovchain
predictiveDistribution
                        predictiveDistribution
preproglucacon          Preprogluccacon DNA protein bases sequences
priorDistribution       priorDistribution
probabilityatT          Calculating probability from a ctmc object
rain                    Alofi island daily rainfall
rctmc                   rctmc
rmarkovchain            Function to generate a sequence of states from
                        homogeneous or non-homogeneous Markov chains.
sales                   Sales Demand Sequences
show,hommc-method       Function to display the details of hommc object
states                  Defined states of a transition matrix
steadyStates            Stationary states of a 'markovchain' object
tm_abs                  Single Year Corporate Credit Rating
                        Transititions
transition2Generator    Return the generator matrix for a corresponding
                        transition matrix
transitionProbability   Function to get the transition probabilities
                        from initial to subsequent states.
verifyMarkovProperty    Test the first-order Markov property of an
                        empirical sequence
zeros                   Matrix to create zeros
