| AggloClust2D | Performs Constrained 2D Agglomerative Clustering |
| loadData | Load and Normalize Hi-C Data |
| performTest | Perform diffHic Test |
| pighic | Dataset "pighic" |
| plot.res2D | Performs Constrained 2D Agglomerative Clustering |
| plot.resdiff | Perform diffHic Test |
| plot.resposthoc | Perform Post Hoc Inference |
| postHoc | Perform Post Hoc Inference |
| print.res2D | Performs Constrained 2D Agglomerative Clustering |
| print.resdiff | Perform diffHic Test |
| print.resposthoc | Perform Post Hoc Inference |
| summary.res2D | Performs Constrained 2D Agglomerative Clustering |
| summary.resdiff | Perform diffHic Test |
| summary.resposthoc | Perform Post Hoc Inference |