# Diagnostic Test Accuracy Meta-Analysis using Template Model Builder

## Documentation for package ‘dtametaTMB’ version 0.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

A C D F I L P R S T V

dtametaTMB-package | dtametaTMB: Diagnostic Test Accuracy Meta-Analysis using Template Model Builder

## -- A --

anaemia | Anaemia (synthetic data set)
anova.dtametaTMB | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.Reitsma | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.ReitsmaLCA | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.ReitsmaSubgroup | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.ReitsmaSubgroupLCA | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.RutterGatsonis | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.RutterGatsonisLCA | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.RutterGatsonisReg | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.RutterGatsonisSubgroup | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anova.RutterGatsonisSubgroupLCA | Likelihood Ratio Tests for Diagnostic Test Accuracy Models
anticcp | Anticcp dataset
as_revman | Export Model Results for RevMan
as_revman.dtametaTMB | Export Model Results for RevMan
as_revman.Reitsma | Export Model Results for RevMan
as_revman.ReitsmaLCA | Export Model Results for RevMan
as_revman.ReitsmaSubgroup | Export Model Results for RevMan
as_revman.ReitsmaSubgroupLCA | Export Model Results for RevMan
as_revman.RutterGatsonis | Export Model Results for RevMan
as_revman.RutterGatsonisLCA | Export Model Results for RevMan
as_revman.RutterGatsonisSubgroup | Export Model Results for RevMan
as_revman.RutterGatsonisSubgroupLCA | Export Model Results for RevMan

## -- C --

coef.dtametaTMB | Extract model coefficients
coef.HoyerAFT | Extract model coefficients
coef.Reitsma | Extract model coefficients
coef.ReitsmaLCA | Extract model coefficients
coef.ReitsmaSubgroup | Extract model coefficients
coef.ReitsmaSubgroupLCA | Extract model coefficients
coef.RutterGatsonis | Extract model coefficients
coef.RutterGatsonisLCA | Extract model coefficients
coef.RutterGatsonisReg | Extract model coefficients
coef.RutterGatsonisSubgroup | Extract model coefficients
coef.RutterGatsonisSubgroupLCA | Extract model coefficients

## -- D --

diabetes | Diabetes dataset
dtametaTMB | dtametaTMB: Diagnostic Test Accuracy Meta-Analysis using Template Model Builder

## -- F --

FENO | FENO dataset
fitHoyer | Fit Threshold-Based Bivariate Time-to-Event Model (Hoyer)
fitHoyerAFT | Fit Threshold-Based Bivariate Time-to-Event Model (Hoyer AFT)
fitReitsma | Fit Reitsma Model
fitReitsmaLCA | Fit Reitsma LCA Model
fitReitsmaSubgroup | Fit Reitsma Subgroup Model
fitReitsmaSubgroupLCA | Fit Reitsma Subgroup LCA Model
fitRutterGatsonis | Fit the Rutter and Gatsonis (HSROC) model
fitRutterGatsonisLCA | Fit Rutter and Gatsonis LCA Model
fitRutterGatsonisReg | Fit the Rutter and Gatsonis Regression Model
fitRutterGatsonisSubgroup | Fit the Rutter and Gatsonis Subgroup Model
fitRutterGatsonisSubgroupLCA | Fit the Rutter and Gatsonis Subgroup LCA Model
forest | Forest plot generic
forest.HoyerAFT | Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.Reitsma | Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.ReitsmaLCA | Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
forest.ReitsmaSubgroup | Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.ReitsmaSubgroupLCA | Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
forest.RutterGatsonis | Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.RutterGatsonisLCA | Coupled Forest plot for latent class diagnostic test accuracy meta-analysis
forest.RutterGatsonisSubgroup | Coupled Forest plot for diagnostic test accuracy meta-analysis
forest.RutterGatsonisSubgroupLCA | Coupled Forest plot for latent class diagnostic test accuracy meta-analysis

## -- I --

initHoyerAFT | Compute Initial Parameter Values for Hoyer AFT Models

## -- L --

logLik.dtametaTMB | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.HoyerAFT | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.Reitsma | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.ReitsmaLCA | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.ReitsmaSubgroup | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.ReitsmaSubgroupLCA | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.RutterGatsonis | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.RutterGatsonisLCA | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.RutterGatsonisReg | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.RutterGatsonisSubgroup | Extract Log-Likelihood from Diagnostic Test Accuracy Models
logLik.RutterGatsonisSubgroupLCA | Extract Log-Likelihood from Diagnostic Test Accuracy Models

## -- P --

pap | pap dataset
plot.HoyerAFT | Plot Results from a Hoyer Model
plot.Reitsma | Plot Results from a Reitsma Model
plot.ReitsmaLCA | Plot Results from a Reitsma LCA Model
plot.ReitsmaSubgroup | Plot Results from a Reitsma Subgroup Model
plot.ReitsmaSubgroupLCA | Plot Results from a Reitsma Subgroup LCA Model
plot.RutterGatsonis | Plot Results from a Rutter and Gatsonis Model
plot.RutterGatsonisLCA | Plot Results from a Rutter and Gatsonis LCA Model
plot.RutterGatsonisSubgroup | Plot Results from a Rutter and Gatsonis Subgroup Model
plot.RutterGatsonisSubgroupLCA | Plot Results from a Rutter and Gatsonis Subgroup LCA Model
print.HoyerAFT | Print Hoyer AFT Model Object
print.Reitsma | Print Method for Reitsma Objects
print.ReitsmaLCA | Print Method for ReitsmaLCA Objects
print.ReitsmaSubgroup | Print Method for ReitsmaSubgroup Objects
print.ReitsmaSubgroupLCA | Print Method for ReitsmaSubgroupLCA Objects
print.RutterGatsonis | Print Method for RutterGatsonis Objects
print.RutterGatsonisLCA | Print Method for RutterGatsonisLCA Objects
print.RutterGatsonisReg | Print Method for RutterGatsonisReg Objects
print.RutterGatsonisSubgroup | Print Method for RutterGatsonisSubgroup Objects
print.RutterGatsonisSubgroupLCA | Print Method for RutterGatsonisSubgroupLCA Objects

## -- R --

restructure_data | Construct Interval Data for Threshold-Based Bivariate Time-to-Event Models
RF | RF dataset

## -- S --

schuetz | Schuetz dataset
summary.HoyerAFT | Summary Method for HoyerAFT Objects
summary.Reitsma | Summary Method for Reitsma Objects
summary.ReitsmaLCA | Summary Method for ReitsmaLCA Objects
summary.ReitsmaSubgroup | Summary Method for ReitsmaSubgroup Objects
summary.ReitsmaSubgroupLCA | Summary Method for ReitsmaSubgroupLCA Objects
summary.RutterGatsonis | Summary Method for RutterGatsonis Objects
summary.RutterGatsonisLCA | Summary Method for RutterGatsonisLCA Objects
summary.RutterGatsonisReg | Summary Method for RutterGatsonisReg Objects
summary.RutterGatsonisSubgroup | Summary Method for RutterGatsonisSubgroup Objects
summary.RutterGatsonisSubgroupLCA | Summary Method for RutterGatsonisSubgroupLCA Objects

## -- T --

tub | tub dataset

## -- V --

vcov.dtametaTMB | Variance-covariance matrix
vcov.HoyerAFT | Variance-covariance matrix
vcov.Reitsma | Variance-covariance matrix
vcov.ReitsmaLCA | Variance-covariance matrix
vcov.ReitsmaSubgroup | Variance-covariance matrix
vcov.ReitsmaSubgroupLCA | Variance-covariance matrix
vcov.RutterGatsonis | Variance-covariance matrix
vcov.RutterGatsonisLCA | Variance-covariance matrix
vcov.RutterGatsonisReg | Variance-covariance matrix
vcov.RutterGatsonisSubgroup | Variance-covariance matrix
vcov.RutterGatsonisSubgroupLCA | Variance-covariance matrix