Flexible Population Dynamics Simulations

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Documentation for package ‘aae.pop’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_remove	Specify additions or removals in models of population dynamics
add_remove_post	Specify additions or removals in models of population dynamics
add_remove_pre	Specify additions or removals in models of population dynamics
all_cells	Isolate elements of population dynamics models
all_classes	Isolate elements of population dynamics models
beverton_holt	Common forms of density dependence
combine	Isolate elements of population dynamics models
covariates	Specify covariate dependence in models of population dynamics
demographic_stochasticity	Specify environmental and demographic stochasticity in models of population dynamics
density_dependence	Specify density dependence in models of population dynamics
density_dependence_n	Specify density dependence in models of population dynamics
density_functions	Common forms of density dependence
dispersal	Specify dispersal between populations in a metapopulation model
dynamics	Create and update population dynamics objects
emps	Calculate expected minimum population size (EMPS) for a 'simulate' object
environmental_stochasticity	Specify environmental and demographic stochasticity in models of population dynamics
exps	Calculate expected population size for a 'simulate' object based on generic functions (ExPS)
format_covariates	Specify covariate dependence in models of population dynamics
get_cdf	Calculate the cumulative distribution function of a summary statistic across all iterations of a 'simulate' object
get_pdf	Calculate the probability density of a summary statistic across all iterations of a 'simulate' object
is.dynamics	Create and update population dynamics objects
is.interaction	Create a population dynamics object with multiple species
is.metapopulation	Create a metapopulation dynamics object
is.multispecies	Create a population dynamics object with multiple species
is.simulation	Simulate single or multispecies population dynamics in R
is.simulation_list	Simulate single or multispecies population dynamics in R
masks	Isolate elements of population dynamics models
metapopulation	Create a metapopulation dynamics object
multispecies	Create a population dynamics object with multiple species
pairwise_interaction	Specify interactions between two species
pr_extinct	Calculate (quasi-)extinction risk for a 'simulate' object
replicated_covariates	Specify replicate-specific covariate dependence in models of population dynamics
reproduction	Isolate elements of population dynamics models
ricker	Common forms of density dependence
risk_curve	Calculate (quasi-)extinction risk at multiple thresholds for a 'simulate' object
rmultiunit	Random number generators not available in existing R packages
rmultiunit_from_real	Random number generators not available in existing R packages
rng	Random number generators not available in existing R packages
runit	Random number generators not available in existing R packages
runit_from_real	Random number generators not available in existing R packages
simulate	Simulate single or multispecies population dynamics in R
simulate.dynamics	Simulate single or multispecies population dynamics in R
stochasticity	Specify environmental and demographic stochasticity in models of population dynamics
survival	Isolate elements of population dynamics models
transition	Isolate elements of population dynamics models
unit_to_real	Random number generators not available in existing R packages
update.dynamics	Create and update population dynamics objects
updaters	Functions for a single time-step update
update_binomial_leslie	Functions for a single time-step update
update_crossprod	Functions for a single time-step update
update_multinomial	Functions for a single time-step update