Tidyverse-Style Operations on Matrices with Row and Column
Metadata
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Documentation for package ‘tidymatrix’ version 0.1.0
Help Pages
| activate | Activate different components of a tidymatrix |
| active | Get the active component of a tidymatrix |
| add_stats | Add statistics to metadata |
| analysis-management | Analysis Management for tidymatrix |
| anti_join.tidymatrix | Join tidymatrix with another data frame |
| arrange.tidymatrix | Arrange the active component of a tidymatrix |
| as.data.frame.tidymatrix | Convert tidymatrix metadata to data.frame |
| as_tibble.tidymatrix | Convert tidymatrix metadata to tibble |
| big5 | Simulated Big Five personality survey |
| big5_countries | Country information for the Big Five survey |
| big5_items | Simulated Big Five personality survey |
| big5_respondents | Simulated Big Five personality survey |
| big5_responses | Simulated Big Five personality survey |
| center | Center the active dimension of an object |
| center.tidymatrix | Center rows or columns |
| check_analyses | Check analysis validity |
| clip_values | Clip matrix values |
| compute_across | Apply a function across matrix dimensions with metadata access |
| compute_anova | Convenience wrapper for ANOVA |
| compute_correlation | Convenience wrapper for correlation tests |
| compute_hclust | Compute hierarchical clustering on tidymatrix |
| compute_kmeans | Compute k-means clustering on tidymatrix |
| compute_kruskal | Convenience wrapper for Kruskal-Wallis test |
| compute_lm | Convenience wrapper for linear models |
| compute_lm_simple | Convenience wrapper for simple linear regression |
| compute_mds | Compute MDS on tidymatrix |
| compute_prcomp | Compute PCA on tidymatrix |
| compute_tsne | Compute t-SNE on tidymatrix |
| compute_ttest | Convenience wrapper for t-tests |
| compute_umap | Compute UMAP on tidymatrix |
| compute_wilcox | Convenience wrapper for Wilcoxon rank-sum test |
| count.tidymatrix | Count observations by group |
| filter.tidymatrix | Filter rows or columns of a tidymatrix |
| full_join.tidymatrix | Join tidymatrix with another data frame |
| get_analysis | Get stored analysis object |
| groups.grouped_tidymatrix | Get grouping variables |
| group_by.tidymatrix | Group a tidymatrix by variables in metadata |
| group_vars.grouped_tidymatrix | Get grouping variable names |
| inner_join.tidymatrix | Join tidymatrix with another data frame |
| is_grouped_tidymatrix | Check if object is a grouped tidymatrix |
| is_tidymatrix | Check if an object is a tidymatrix |
| joins | Join tidymatrix with another data frame |
| left_join.tidymatrix | Join tidymatrix with another data frame |
| list_analyses | List stored analyses |
| log_transform | Log transform matrix |
| matrix-operations | Matrix Operations for tidymatrix |
| mutate.tidymatrix | Mutate the active component of a tidymatrix |
| plot_pheatmap | Create a pheatmap from tidymatrix |
| print.grouped_tidymatrix | Print a grouped tidymatrix |
| print.tidymatrix | Print a tidymatrix object |
| pull.tidymatrix | Extract a column from metadata as a vector |
| pull_active | Extract the active component from a tidymatrix |
| relocate.tidymatrix | Relocate columns in metadata |
| remove_analysis | Remove stored analysis |
| rename.tidymatrix | Rename columns in metadata |
| right_join.tidymatrix | Join tidymatrix with another data frame |
| scale.tidymatrix | Scale rows or columns |
| select.tidymatrix | Select columns from row or column metadata |
| semi_join.tidymatrix | Join tidymatrix with another data frame |
| slice.tidymatrix | Slice rows or columns by position |
| slice_head.tidymatrix | Select first or last rows/columns |
| slice_sample.tidymatrix | Select a random sample of rows/columns |
| slice_tail.tidymatrix | Select first or last rows/columns |
| summarise.grouped_tidymatrix | Summarize grouped tidymatrix |
| summarize.grouped_tidymatrix | Summarize grouped tidymatrix |
| t.tidymatrix | Transpose a tidymatrix |
| tally.grouped_tidymatrix | Count observations in groups |
| tidymatrix | Create a tidymatrix object |
| to_long | Convert tidymatrix to long-format data.frame |
| transform_matrix | Apply a function to the matrix |
| ungroup.grouped_tidymatrix | Remove grouping from a grouped tidymatrix |