Utility Functions for 'CDMetaPOP'

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Documentation for package ‘cdmetapopR’ version 2.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_rows	Add one or more rows to a cdmetapopR input-file object
age_structure_proportions	Determine the proportions of the age structure of the population
allele_frequencies_ind	Plot Individual-Level Allele Frequencies
as.data.frame.ClassVars	View a cdmetapopR input-file object as a plain data frame
cdmetapop_to_gene	Convert CDMetaPOP data to GENEPOP or GENALEX format
ClassVars	Create a ClassVars object
create_cdmat	Create cost distance matrix for CDMetaPOP simulation
DiseaseVars	Create a DiseaseVars object
heterozygosity_ind	Plot Individual-Level Heterozygosity
launch_cdmetapop	Launch a CDMetaPOP simulation from R
make_classvars	Build ClassVars File from Template
make_diseasevars	Build DiseaseVars File from Template
make_patchvars	Build PatchVars File from Template
make_popvars	Build PopVars File from Template
make_runvars	Build RunVars File from Template
pairwise_fst_ind	Plot Pairwise FST Between Individual Groups
PatchVars	Create a PatchVars object
PopVars	Create a PopVars object
read_cdmetapop	Read an existing CDMetaPOP input file into an R6 object
RunVars	Create a RunVars object
summary_class	Plot CDMetaPOP Class Summary Dynamics
summary_dataframe	Return CDMetaPOP Output Data as Data Frames
summary_disease	Summarize CDMetaPOP Disease States
summary_ind	Plot CDMetaPOP Individual File Summaries
summary_patch_map	Map CDMetaPOP Patch Abundance
summary_pop	Plot CDMetaPOP Population Summary Dynamics
write_cdmetapop	Write a cdmetapopR input-file object to a csv file