GUI Tools Made Easy: Interact with Models and Explore Data
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Documentation for package ‘PBSmodelling’ version 2.70.2
- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
Help Pages
A B C D E F G I J L O P R S T U V W misc
| PBSmodelling-package | PBS Modelling |
-- A --
| addArrows | Add Arrows to a Plot Using Relative (0:1) Coordinates |
| addHistory | Create Structures for a New History Widget |
| addLabel | Add a Label to a Plot Using Relative (0:1) Coordinates |
| addLegend | Add a Legend to a Plot Using Relative (0:1) Coordinates |
-- B --
| backHistory | Create Structures for a New History Widget |
| break-class | S4: Present Talk Classes |
-- C --
| calcFib | Calculate Fibonacci Numbers by Several Methods |
| calcGM | Calculate the Geometric Mean, Allowing for Zeroes |
| calcMin | Calculate the Minimum of a User-Defined Function |
| CCA.qbr | Data: Sampled Counts of Quillback Rockfish (Sebastes maliger) |
| chooseWinVal | Choose and Set a String Item in a GUI |
| cleanProj | Launch a GUI for Project File Deletion |
| cleanWD | Launch a GUI for File Deletion |
| clearAll | Remove all R Objects From a Specified Environment |
| clearHistory | Create Structures for a New History Widget |
| clearPBSext | Clear File Extension Associations |
| clearRcon | Clear the R Console / Focus on the RGui Window |
| clearWinVal | Remove all Current Widget Variables |
| clipVector | Clip a Vector at One or Both Ends |
| closeWin | Close GUI Window(s) |
| code-class | S4: Present Talk Classes |
| compileC | Compile a C File into a Shared Library Object |
| compileDescription | Convert and Save a Window Description as a List |
| convSlashes | Convert Slashes from UNIX to DOS |
| createVector | Create a GUI with a Vector Widget |
| createWin | Create a GUI Window |
-- D --
| declareGUIoptions | Declare Option Names that Correspond with Widget Names |
| doAction | Execute Action Created by a Widget |
| drawBars | Draw a Linear Barplot on the Current Plot |
-- E --
| evalCall | Evaluate a Function Call |
| expandGraph | Expand the Plot Area by Adjusting Margins |
| exportHistory | Export a Saved History |
-- F --
| file-class | S4: Present Talk Classes |
| findPat | Search a Character Vector to Find Multiple Patterns |
| findPrefix | Find a Prefix Based on Names of Existing Files |
| findProgram | Locates a program in the PATH environment variable |
| findSuffix | Find a Prefix Based on Names of Existing Files |
| firstHistory | Create Structures for a New History Widget |
| focusRgui | Clear the R Console / Focus on the RGui Window |
| focusWin | Set the Focus on a Particular Window |
| forwHistory | Create Structures for a New History Widget |
-- G --
| genMatrix | Generate Test Matrices for plotBubbles |
| getChoice | Choose One String Item from a List of Choices |
| getGUIoptions | Get PBS Options for Widgets |
| getOptions | Get and Set User Options |
| getOptionsFileName | Get and Set File Name for Saving and Loading of Options |
| getOptionsPrefix | Get and Set GUI Prefix of Options Class |
| getPBSext | Get Command Associated With File Name Extension |
| getPBSoptions | Retrieve A User Option |
| getWinAct | Retrieve the Last Window Action |
| getWinFun | Retrieve Names of Functions Referenced in a Window |
| getWinVal | Retrieve Widget Values for Use in R Code |
| getYes | Prompt the User to Choose Yes or No |
| GT0 | Restrict a Numeric Variable to a Positive Value |
-- I --
| importHistory | Import a History List from a File |
| initHistory | Create Structures for a New History Widget |
| isWhat | Identify an Object and Print Information |
-- J --
| jumpHistory | Create Structures for a New History Widget |
-- L --
| lastHistory | Create Structures for a New History Widget |
| lisp | List Objects in .PBSmodEnv Workspace |
| loadC | Launch a GUI for Compiling and Loading C Code |
| loadOptions | Save and Load Options to and from Disk |
| loadOptionsGUI | Load and Save Options Values to and from a GUI |
| lucent | Convert Solid Colours to Translucence |
-- O --
| openExamples | Open Example Files from a Package |
| openFile | Open File with Associated Program |
| openUG | Open Package User Guide |
-- P --
| packList | Pack a List with Objects |
| pad0 | Pad Values with Leading Zeroes |
| parseWinFile | Convert a Window Description File into a List Object |
| pause | Pause Between Graphics Displays or Other Calculations |
| PBSmodelling | PBS Modelling |
| PBSoptions-class | S4: Project Options Class |
| pickCol | Pick a Colour From a Palette and get the Hexadecimal Code |
| plotACF | Plot Autocorrelation Bars From a Data Frame, Matrix, or Vector |
| plotAsp | Construct a Plot with a Specified Aspect Ratio |
| plotBubbles | Construct a Bubble Plot from a Matrix |
| plotCsum | Plot Cumulative Sum of Data |
| plotDens | Plot Density Curves from a Data Frame, Matrix, or Vector |
| plotFriedEggs | Render a Pairs Plot as Fried Eggs and Beer |
| plotSidebars | Plot Table as Horizontal Sidebars |
| plotTrace | Plot Trace Lines from a Data Frame, Matrix, or Vector |
| presentTalk | Run a Presentation in R |
| print-method | S4: Project Options Class |
| promptWriteOptions | Prompt the User to Write Changed Options |
-- R --
| readList | Read a List from an ASCII File |
| readPBSoptions | Read PBS Options from an External File |
| resetGraph | Reset par Values for a Plot |
| restorePar | Get Actual Parameters from Scaled Values |
| rmHistory | Create Structures for a New History Widget |
| runDemos | Interactive GUI for R Demos |
| runExample | Run a Single GUI Example Included with PBS Modelling |
| runExamples | Run GUI Examples Included with PBS Modelling |
-- S --
| saveOptions | Save and Load Options to and from Disk |
| saveOptionsAs | Save and Load Options to and from Disk |
| saveOptionsGUI | Load and Save Options Values to and from a GUI |
| scalePar | Scale Parameters to [0,1] |
| section-class | S4: Present Talk Classes |
| selectDir | Display Dialogue: Select directory |
| selectFile | Display Dialogue: Open or Save File |
| setFileOption | Set a PBS File Path Option Interactively |
| setGUIoptions | Set PBS Options from Widget Values |
| setOptions | Get and Set User Options |
| setOptionsFileName | Get and Set File Name for Saving and Loading of Options |
| setOptionsPrefix | Get and Set GUI Prefix of Options Class |
| setPathOption | Set a PBS Path Option Interactively |
| setPBSext | Set Command to Associate with File Name Extension |
| setPBSoptions | Set A User Option |
| setwdGUI | Browse for Working Directory and Optionally Find Prefix |
| setWidgetColor | Update Widget Color |
| setWidgetState | Update Widget State |
| setWinAct | Add a Window Action to the Saved Action Vector |
| setWinVal | Update Widget Values |
| show-method | S4: Project Options Class |
| show0 | Convert Numbers into Text with Specified Decimal Places |
| showAlert | Display a Message in an Alert Window |
| showArgs | Display Expected Widget Arguments |
| showHelp | Display HTML Help Pages for Packages in Browser |
| showPacks | Show Packages Required But Not Installed |
| showRes | Show Results of Expression Represented by Text |
| showVignettes | Display Vignettes for Packages |
| sortHistory | Sort an Active or Saved History |
-- T --
| talk-class | S4: Present Talk Classes |
| tcall | Get/Put Objects From/To Temporary Work Environment |
| testAlpha | Test Various Alpha Transparency Values |
| testCol | Display Colours Available Using a Set of Strings |
| testLty | Display Line Types Available |
| testLwd | Display Line Widths |
| testWidgets | Display Sample GUIs and their Source Code |
| text-class | S4: Present Talk Classes |
| tget | Get/Put Objects From/To Temporary Work Environment |
| tprint | Get/Put Objects From/To Temporary Work Environment |
| tput | Get/Put Objects From/To Temporary Work Environment |
-- U --
| unpackList | Unpack List Elements into Variables |
| updateGUI | Update Active GUI With Local Values |
-- V --
| vbdata | Data: Lengths-at-Age for von Bertalanffy Curve |
| vbpars | Data: Initial Parameters for a von Bertalanffy Curve |
| view | View First/Last/Random n Elements/Rows of an Object |
| viewCode | View Package R Code |
-- W --
| widgets | Display Sample GUIs and their Source Code |
| writeList | Write a List to a File in PBS Modelling Format |
| writePBSoptions | Write PBS Options to an External File |
-- misc --
| .addslashes | Dot Support Functions |
| .adjustAllColours | Dot GUI Functions |
| .autoConvertMode | Dot GUI Functions |
| .buildgrid | Dot GUI Functions |
| .catError | Dot GUI Functions |
| .catError2 | Dot GUI Functions |
| .check.object.exists | Dot GUI Functions |
| .cleanLoadC | Dot C Support Functions |
| .convertMatrixListToDataFrame | Dot Convert Functions |
| .convertMatrixListToMatrix | Dot Convert Functions |
| .convertMode | Dot Convert Functions |
| .convertOldGridToNewGrid | Dot Convert Functions |
| .convertParamStrToList | Dot Convert Functions |
| .convertParamStrToVector | Dot Convert Functions |
| .convertVecToArray | Dot Convert Functions |
| .createTkFont | Dot Create Functions |
| .createWidget | Dot Create Functions |
| .createWidget.button | Dot Create Functions |
| .createWidget.check | Dot Create Functions |
| .createWidget.data | Dot Create Functions |
| .createWidget.droplist | Dot Create Functions |
| .createWidget.entry | Dot Create Functions |
| .createWidget.grid | Dot Create Functions |
| .createWidget.history | Dot History Functions |
| .createWidget.image | Dot Create Functions |
| .createWidget.include | Dot Create Functions |
| .createWidget.label | Dot Create Functions |
| .createWidget.matrix | Dot Create Functions |
| .createWidget.notebook | Dot Create Functions |
| .createWidget.null | Dot Create Functions |
| .createWidget.object | Dot Create Functions |
| .createWidget.object.scrolling | Dot Create Functions |
| .createWidget.progressbar | Dot Create Functions |
| .createWidget.radio | Dot Create Functions |
| .createWidget.slide | Dot Create Functions |
| .createWidget.slideplus | Dot Create Functions |
| .createWidget.spinbox | Dot Create Functions |
| .createWidget.table | Dot Create Functions |
| .createWidget.text | Dot Create Functions |
| .createWidget.vector | Dot Create Functions |
| .dClose | Dot Support Functions |
| .do.gui.call | Dot GUI Functions |
| .doClean | Dot Project Functions |
| .doCleanWD | Dot Project Functions |
| .dUpdateDesc | Dot Support Functions |
| .extractData | Dot GUI Functions |
| .extractFuns | Dot GUI Functions |
| .extractVar | Dot GUI Functions |
| .fibC | Dot Support Functions |
| .fibCall | Dot Support Functions |
| .fibClosedForm | Dot Support Functions |
| .fibR | Dot Support Functions |
| .findSquare | Dot Support Functions |
| .forceMode | Dot Support Functions |
| .getArrayPts | Dot Support Functions |
| .getButton | Dot Talk Functions |
| .getButtons | Dot Talk Functions |
| .getHiddenEnv | Dot Project Functions |
| .getHome | Dot Project Functions |
| .getIndexForSection | Dot Talk Functions |
| .getMatrixListSize | Dot GUI Functions |
| .getMenus | Dot Talk Functions |
| .getParamFromStr | Dot GUI Functions |
| .getPrefix | Dot Project Functions |
| .getSectionNames | Dot Talk Functions |
| .getSimilarColour | Dot GUI Functions |
| .getTalkIndexes | Dot Talk Functions |
| .getValueForWidgetSetup | Dot GUI Functions |
| .guiCompileC | Dot C Support Functions |
| .guiDyn | Dot C Support Functions |
| .guiSource | Dot C Support Functions |
| .inCollection | Dot GUI Functions |
| .initPBSoptions | Dot Support Functions |
| .libName | Dot C Support Functions |
| .loadCRunComparison | Dot C Support Functions |
| .makeCleanVec | Dot Project Functions |
| .map.add | Dot GUI Functions |
| .map.get | Dot GUI Functions |
| .map.getAll | Dot GUI Functions |
| .map.init | Dot GUI Functions |
| .map.set | Dot GUI Functions |
| .mapArrayToVec | Dot Support Functions |
| .matrixHelp | Dot GUI Functions |
| .maxActionSize | Dot Widget Definitions |
| .mergeLists | Dot List Functions |
| .mergeLists2 | Dot Project Functions |
| .mergeVectors | Dot Project Functions |
| .nextSlide | Dot Talk Functions |
| .optionsNotUpdated | Dot Project Functions |
| .packWidgetsIntoGrid | Dot GUI Functions |
| .parsegrid | Dot GUI Functions |
| .parsemenu | Dot GUI Functions |
| .parseTalkFile | Dot Talk Functions |
| .PBSdimnameHelper | Dot GUI Functions |
| .PBSmodEnv | PBSmodelling Environment |
| .pFormatDefs | Dot Widget Definitions |
| .presentTalkOpenFile | Dot Talk Functions |
| .prevSlide | Dot Talk Functions |
| .readList.C | Dot List Functions |
| .readList.P | Dot List Functions |
| .readList.P.convertData | Dot List Functions |
| .regex.complex | Dot Widget Definitions |
| .regex.logical | Dot Widget Definitions |
| .regex.numeric | Dot Widget Definitions |
| .removeFromList | Dot Project Functions |
| .searchCollection | Dot GUI Functions |
| .sectiondrop | Dot Talk Functions |
| .selectCleanBoxes | Dot Project Functions |
| .setMatrixElement | Dot GUI Functions |
| .setOption | Dot Project Functions |
| .setsection | Dot Talk Functions |
| .setWinValHelper | Dot GUI Functions |
| .showLog | Dot Project Functions |
| .showOptions | Get and Set User Options |
| .slidedrop | Dot Talk Functions |
| .sortHelper | Dot History Functions |
| .sortHelperActive | Dot History Functions |
| .sortHelperFile | Dot History Functions |
| .sortWidget | Dot History Functions |
| .startSlide | Dot Talk Functions |
| .stopWidget | Dot GUI Functions |
| .stripComments | Dot GUI Functions |
| .stripExt | Dot Project Functions |
| .stripSlashes | Dot GUI Functions |
| .stripSlashesVec | Dot GUI Functions |
| .superobject.redraw | Dot GUI Functions |
| .superobject.saveValues | Dot GUI Functions |
| .table.getvalue | Dot GUI Functions |
| .table.setvalue | Dot GUI Functions |
| .tagDefs | Dot Widget Definitions |
| .tagOptionChecks | Dot Widget Definitions |
| .tclArrayToVector | Dot Support Functions |
| .trimWhiteSpace | Dot GUI Functions |
| .tryOpen | Dot Project Functions |
| .updateFile | Dot History Functions |
| .updateHistory | Dot History Functions |
| .updateHistoryButtons | Dot History Functions |
| .updateSlide | Dot Talk Functions |
| .validateWindowDescList | Dot GUI Functions |
| .validateWindowDescWidgets | Dot GUI Functions |
| .viewPkgDemo | Dot Support Functions |
| .viewPkgVignette | Dot Support Functions |
| .widgetDefs | Dot Widget Definitions |
| .win.chFile | GUI Windows Wrappers |
| .win.chTest | GUI Windows Wrappers |
| .win.closeALL | GUI Windows Wrappers |
| .win.closeChoice | GUI Windows Wrappers |
| .win.closeSDE | GUI Windows Wrappers |
| .win.makeChoice | GUI Windows Wrappers |
| .win.restoreCWD | GUI Windows Wrappers |
| .win.runExHelperQuit | GUI Windows Wrappers |
| .win.tcall | GUI Windows Wrappers |
| .win.tget | GUI Windows Wrappers |
| .win.tprint | GUI Windows Wrappers |
| .writeList.P | Dot List Functions |