eca1aabf3434c0576b75a6028948f240 *DESCRIPTION
61588a1fedd2db57509db89e82b27227 *NAMESPACE
cd5c173f0f0905c4b0bb4c3c576cc718 *R/RcppExports.R
908294afd10510881bd70ce3faaecd33 *R/dnaManipulate.R
105d15bdfdd6f9dbf1106a3d8d35d973 *R/external.R
fc7f7fe21b4c366d29db103de6735b8e *R/fasta.R
69d388a8a05ccaaec56d9f37fa461efa *R/fastq.R
02b01d30c15b606424fa6f1de1f02df2 *R/gff.R
b103a89eff7063b2e9f0252baa6e7706 *R/microseq-package.R
539a24abbcf3c7052766730243e95303 *R/multialign.R
550fee84753c6a4c5af3c70821922d14 *R/orfs.R
e1d9deda67d179f7d0b41536599c4c1c *R/utilityfun.R
568e100d943082017e4a225a953f316c *build/vignette.rds
b2ef10b9ecdbfaf8d2e39fb65deb777f *inst/doc/vignette.R
418db65b11501b9ee6295b8aa4210a7c *inst/doc/vignette.Rnw
32d18a782cf3faa247b15ae458da59ba *inst/doc/vignette.pdf
af1e142fcd921434271b775104402eba *inst/extdata/16S.fasta
f67702a09be65b9703a89f10309b951e *inst/extdata/small.faa
de6f80cfe8dbbdf1728facd546bc8c5b *inst/extdata/small.fastq.gz
e58d1eee8cf80f5d4b02a0ff22678002 *inst/extdata/small.ffn
0258dbb6ee28611040e0fb9078a36319 *inst/extdata/small.fna
fc701eae38ac1319e1f4939caf74b21b *inst/extdata/small.gff
d8c9ff71f889b580a9c6d4adeb291eb1 *inst/extdata/small.msa
fa3c12881e60d2d33376c2c7d19425e3 *man/backTranslate.Rd
6250de7bdf3578e560986fbe8647f2e0 *man/findGenes.Rd
ddf5e2b969c8670c0fa6eea59665d67b *man/findOrfs.Rd
97c222cc4e006cd5a92221135a40913e *man/findrRNA.Rd
0eb32e2d481a49039c0f67e1651290f5 *man/gff2fasta.Rd
ac3983e1f58d12705d3a1f7b4413b675 *man/gregexpr.Rd
2279a6cd441d716c99c563a0f3698d1f *man/iupac2regex.Rd
4e65a38726bc90840714fa2a09d4585e *man/lorfs.Rd
ffd7f34bde8dfe9e616b2e0bb62ee2db *man/microseq-package.Rd
fdece0a8336a67edb60c26c860942ec7 *man/msa2mat.Rd
7ee47dfb3f996141b5bc463c97d2e18d *man/msaTrim.Rd
2fbbf672365e760f54e92a0e3ea56b10 *man/msalign.Rd
8ae3cd898303a51b3447ab92e9928e8c *man/muscle.Rd
05876c7d0cae365b26ef46f71274d95a *man/orfLength.Rd
5cddbc2e30292acb0f85ba5887b03c4a *man/orfSignature.Rd
68b5c96b455b7533eae5224072b57aa8 *man/readFasta.Rd
6a653d8c72fb407cfcb29565002bce64 *man/readFastq.Rd
a1ef0ffd5a5208b1c365525e6c149abd *man/readGFF.Rd
a82023824bed836ca2445445fbb28bea *man/reverseComplement.Rd
91d85dc47d20ba6811c209fa1b616db8 *man/translate.Rd
9075a342959a68c339744d97fc54dd44 *src/Makevars
453b92a74f147ed25678e3ef7b9d41d9 *src/Makevars.win
5ca63e536e90571549ebc6061a7d6602 *src/ORF_index.cpp
78f3f0886d6a08cf4a57d20d2470acea *src/RcppExports.cpp
ba139b8216b1192b8a5a833529a9e606 *src/extractSeq.cpp
d01287dea6228346281497855b426ae4 *src/init.c
6ece79a89fa2ff8f7d3dc357cbc8c604 *src/revComp.cpp
ffff2563e65622575148c5c93195b575 *src/translate.cpp
d9363e28b6f1169e802d2339c9ce1506 *vignettes/vignette-concordance.tex
418db65b11501b9ee6295b8aa4210a7c *vignettes/vignette.Rnw
