401ee84b50006295623db38db5b28b29 *DESCRIPTION
34b27b370ab2a515890e3e9a79db7010 *NAMESPACE
8cd3f746dc56a30c661a44c40f576b48 *R/rbamtools.r
fc9a0f34fb3246a8a6327aab59f11185 *inst/extdata/accepted_hits.bam
ae605096a18a55922d8c9fd750b919fa *inst/extdata/accepted_hits.bam.bai
6ab922048f9db7b14b34dd43ea4eddb6 *man/as.data.frame-methods.Rd
3d7b1246fb6cabfc67074d73651373ea *man/bamAlign-class.Rd
834772109d6ed6bb079c0adc90241a25 *man/bamClose-methods.Rd
be6c7ac094b280569d130e71ae78182d *man/bamHeader-class.Rd
38d5360cb908c6907b17d1d5844a477a *man/bamHeaderText-class.Rd
6aab17a586c19f62c1e5811cff8da479 *man/bamRange-class.Rd
d564263781dfeb7034490085f58f6411 *man/bamRange.Rd
3c99c3f3dd59664e9340dd69d38224c8 *man/bamReader-class.Rd
ee1ddf1c7b2632f00b0f5ed84e671962 *man/bamReader.Rd
78704d3fd41df76305379b9904bc88af *man/bamWriter-class.Rd
a7733d4fdc67173bba1f1a21fefc9f8a *man/bamWriter.Rd
d02d631ce7033fa6ee91860508aa10dc *man/filename-methods.Rd
102f08db6e172eb168170c229b3880b7 *man/gapList-class.Rd
51c82816b832dd64ebe7fe015bc69cd2 *man/getHeaderText-methods.Rd
afa3623d21941da3c262a06b75c7184b *man/getNextAlign-methods.Rd
61ece04498943dd1a861bf0b6dc575e0 *man/getVal.Rd
ed88cdfa7a2aa82995daf3100a13184d *man/headerLine-class.Rd
e746e233be84d9ca887d3f5dcd81bead *man/headerProgram-class.Rd
5a0f2d835902efb80b9669e0a4fbac7d *man/headerReadGroup-class.Rd
a0980a4317e856c779589bd9d2a86794 *man/isOpen-methods.Rd
2f1479b4e088fb55dc26628e56cd6e7f *man/rbamtools-package.Rd
9c222e0b4daa9244c8100bb28d26a8a2 *man/refSeqDict-class.Rd
bb61babfa2eb94a8095a299572d405f2 *man/setVal.Rd
1909330c349a0b8654595c7accb89fb1 *src/Makevars
b2ab8d847907bfe5f92a3c04cdf4d2a0 *src/Makevars.win
d6baff0a3b44e03ecd5ffc31541a35de *src/align_list.h
56af55b9515b725bf6f2fc38910a9964 *src/gap_list.h
7fd0a8377520ce5a14c65f32ccb39cd8 *src/rbamtools.c
73e0ba2133d80e5aec7daef4fe1bb146 *src/rbamtools.h
2e4c02f66ddf5b45e5f82ff579740386 *src/samtools/LICENSE
2ed5e20907d44f4c2584ef197296abc6 *src/samtools/bam.c
b3c42f239a0f1474358e2b12c83c154c *src/samtools/bam.h
cf98ab784ab45ae45d1a56733ce9b0af *src/samtools/bam_aux.c
aba13a3883d7d117af33a6d8fe8c1ed1 *src/samtools/bam_endian.h
8b35bfd92210b3c4a3e7015146d8a192 *src/samtools/bam_import.c
8d2f2c341bea6ba7b7e084f7e146125c *src/samtools/bam_index.c
3d182e57715cca7ebdd4748d3ac08cae *src/samtools/bam_sort.c
bd257862695fb9adc5e31f2e144289be *src/samtools/bgzf.c
e376e8bf01fea48bb5f169aa5df70558 *src/samtools/bgzf.h
cca296bfde636df363483321368c26f6 *src/samtools/faidx.c
060c5e036ec8bd44ec5e25549a1e160f *src/samtools/faidx.h
827428496eca8cc4aa8edd431e884f29 *src/samtools/khash.h
eba34f72610803cfb5fc09f4a8bf31b5 *src/samtools/kseq.h
673540581d98ec8fb359bf3ca08abfe3 *src/samtools/ksort.h
7fd7e5f5701b912345a4005add5076c1 *src/samtools/kstring.c
f42ecea12ac8c5e0efc76061a2fdf29d *src/samtools/kstring.h
1db8d745431381326bd4a4ce83b26e1c *src/samtools/razf.c
799bfb3cc0b3c7a25f84699588aa1d96 *src/samtools/razf.h
f9718d487a6cbcda29ca3286b6987b32 *src/samtools/sam.c
eb06482d20c8cbceead50f119c2a0229 *src/samtools/sam.h
752b4fd51d86c25f2cd01122f6f6371e *src/samtools/sam_header.c
8dd7c977d83077c0554fad6a1bb78043 *src/samtools/sam_header.h
