ed4c8e7990f0c356830090b3f117a7fc *DESCRIPTION
4ad27f43f7291ebf43c19a71ca84b75a *LICENSE
b57b3264ae977f5287ae6397e26d275e *NAMESPACE
5f0961cd909bbd1826aaf2c258454d4c *NEWS.md
e04112ea95873d34bac27f22f3c2ecba *R/ASRgenomics.R
48bba883478d5a1a75551a0eac475d06 *R/G_inverse.R
82d0fa2ee514a28b73aae28b053c4b60 *R/G_matrix.R
47a84d34d5e9fa719753b7223e3e6749 *R/G_predict.R
4b256bc2a81c6c3d8849709a699757b2 *R/G_tuneup.R
1d23fd1f56ae2381ab2f1c43420e6927 *R/H_Inverse.R
0f9b56f8dcff8c5e72b4d7402b2753a4 *R/H_matrix.R
4acdf0a93c5b7c3a9818b2c61695fa61 *R/Kinship_heatmap.R
30d52e57233cfb3bee658e42b76c516f *R/Kinship_pca.R
54cdfd992157dbb03cd564980cbf0dfc *R/auxiliar.R
762ddbb68c2129cd79abef8bcf0c6d91 *R/check_args.R
645dec453c313d74c8d25171db93badc *R/full2sparse.R
71f8f475b985595b22dc1bbb0817e278 *R/geno_apple.R
9a8b0c569fd0129bd2e7a1d22bbd335e *R/geno_pine655.R
90732a6b41c6db6a5b889bafba3f3e79 *R/geno_pine926.R
be949021d326d4f721f5b38421c7dfda *R/geno_salmon.R
03505ba32b86ea9e2920e33f267ad846 *R/genomic_summaries.R
5d7527ec48b11cfcf9e409b41f1a3970 *R/kinship_diagnostics.R
c1d6747dbd56f268dfc9519f8bacc68e *R/match_G2A.R
3f3e9460f1be72563baf672b1cee51d7 *R/match_kinship2pheno.R
264aaaeb569d69ccf92cecb8409ba13d *R/ped_pine.R
4916c121f22fb315269861b8d72be882 *R/ped_salmon.R
623d825a01a3e894e66830c191be9e25 *R/pheno_apple.R
b7245df080dc8d0a545231c3e02db1d0 *R/pheno_pine.R
6d0099f6f50830ed9ea5a6509003cbe6 *R/pheno_salmon.R
0d798bcd07a8a4e492343d82206339ba *R/qc_filtering.R
b62648ce5f03d65ba5984578895a221c *R/snp_pca.R
608586e5b2f0b230f2798003b15eeffc *R/snp_pruning.R
f3ad176a11dbc4c4343b625fa982a99e *R/snp_recode.R
b7d41e78933d2d0f54db148434cf3d16 *R/sparse2full.R
b82e9065c8a847fc724376580c83a746 *R/synthetic_cross.R
ac9bc378b429e585e165783d4b44a0f7 *data/geno.apple.rda
4b5f9e5777ec9aecd5c8c1c4d735dcd3 *data/geno.pine655.rda
9427d6c79b1fdceb5f74293e00e51fa5 *data/geno.pine926.rda
36239152a1b0d5a93d374a85ab059a56 *data/geno.salmon.rda
7b32d5967fa8935cc7ec43b09a9ee954 *data/ped.pine.rda
af79b29911ea53d8b8c261ad7548ca9c *data/ped.salmon.rda
4f0116e084cfcbde97b2d30b71d16562 *data/pheno.apple.rda
7cef699478b5c6dca64ba222fdce8719 *data/pheno.pine.rda
3c4a80e7f8737229347074256a54f6bd *data/pheno.salmon.rda
3362e32936b746656b2f62a559dfdf0a *inst/CITATION
d27ed29a4ba541a852f01967d19297c8 *inst/WORDLIST
b96d87a2b76e0d81699a6928b020cf0e *inst/docs/ASRgenomics_Manual_summary.pdf
d9a542daf90941d6e6252e35c572179e *man/ASRgenomics.Rd
8611ae30c8f24d279ddd74005d24d363 *man/Fis.Rd
866e25a397ae9b493110fe967972d678 *man/G.inverse.Rd
a38a99bbdf4e5c8dcf678890a6ae4150 *man/G.matrix.Rd
c55bf99db5ed0fa33374d0cd26d1dff5 *man/G.predict.Rd
a5267fc589e689558e49822a40aa297d *man/G.tuneup.Rd
ebd9add2979e3d331b6ad165a6b021d9 *man/H.inverse.Rd
7be9bd648680769ed1620b059fbed468 *man/H.matrix.Rd
18adde6bd5f837c0ceb68977a62fc3fa *man/Kinv.condition.Rd
17a7f736c677d1c7dbb4fac8e48fe054 *man/callrate.Rd
2279c93742f29fa40576930de9092447 *man/check.args_.Rd
b1561829b94e7735e584003725903e2e *man/check.data.mode_.Rd
bf79143c9eb4866f0eb79792dfa14fa4 *man/check.data_.Rd
8616db25a930c81ce10f927fd55908dc *man/check.logical_.Rd
dce28f460d4d3ebc2d3a9d8f8929e2ab *man/dummy.map_.Rd
b02d92a72ff3df46db41e16434f2fa83 *man/full2sparse.Rd
4f496c90d4c02db06d9eaccd50125363 *man/geno.apple.Rd
619985b70690f18c49c33f32c71b932c *man/geno.pine655.Rd
bd2a110922aedad18f25e90b590cd396 *man/geno.pine926.Rd
cf07211d48e7baa0dbed06a6cdd125f6 *man/geno.salmon.Rd
afe171d7daa8ddfe4a03b79794e105d4 *man/heterozygosity.Rd
652f5f55c5c82e275245d1686b81f095 *man/kinship.diagnostics.Rd
50c8472dd5a6ffe8fd5368a3c038c41c *man/kinship.heatmap.Rd
b92eb7a9bcf284bc9949514c886ae980 *man/kinship.pca.Rd
743ecc4cfc610179e0aead1cbd9c35ec *man/maf.Rd
40bc8085daf390acf23d2a6319948b29 *man/match.G2A.Rd
5331179d72a2563240a07352d830336a *man/match.kinship2pheno.Rd
9c6e2c9ecfae40bd6749ca4d9f960f32 *man/ped.pine.Rd
8ace23b1f4cd71ce774f6cc9bac988a6 *man/ped.salmon.Rd
f82aecf1089ba725f3d7d7da7feec15e *man/pheno.apple.Rd
2dec0976c96bc7c0fdd42c7d3ed027ee *man/pheno.pine.Rd
bea6252f34e54bfaa842f531f41304bd *man/pheno.salmon.Rd
5b7ab54b980a4d28a74bf735be527028 *man/qc.filtering.Rd
0df796ef8746e54b95531bf7f473a115 *man/silent_.Rd
938a0cb0363c090b71df47a0fd63c441 *man/snp.pca.Rd
74eb1adda76111ff58afb23f34818163 *man/snp.pruning.Rd
0148495df2db4abe9f946ebbae649f28 *man/snp.recode.Rd
0a1f315906433b9eba9b5d9321295aaa *man/sparse2full.Rd
aa86a10ffd521004d072833c4c026b5a *man/synthetic.cross.Rd
332173f20d20942c02019350ea4dcadc *tests/spelling.R
1e3a742e672b0d6e4b403e15a95f7ba6 *tests/testthat.R
20c90cc0d32c63d5cb8f95a4da7192e5 *tests/testthat/test-Ginverse.R
c6193fd8583975e7a97a4d5ed4876c52 *tests/testthat/test-Gmatrix.R
8489721f750965018f2585aa1739a89e *tests/testthat/test-Gpredict.R
8177c063566f34be2d3534a53c75b5f2 *tests/testthat/test-Gtuneup.R
144c26814dc72aef2de05ae13c7cbbf3 *tests/testthat/test-Hinverse.R
72cebdd33372d8527bf24ff8b2aaa6a7 *tests/testthat/test-Hmatrix.R
cd2784a0dff0ca5f0f898ba3555eadbb *tests/testthat/test-checkargs.R
10a810a6ed78086bc96e38fdab751811 *tests/testthat/test-internal.R
8551dc34365715c93bd302252f9cafb6 *tests/testthat/test-kinshipdiagnostics.R
c52fc4eb3707cac50af473829a3ed0e6 *tests/testthat/test-kinshipheat.R
23b79388a98bfefbc8806b04781668ab *tests/testthat/test-kinshippca.R
d1ac27e74f60cf7729243067bcf66784 *tests/testthat/test-matchG2A.R
acb85aeb138df34a9437598a77b63174 *tests/testthat/test-matchK2pheno.R
06233ad63bc40e994656e8a05161ce4f *tests/testthat/test-qc.R
b9274edc311910552eb1d26f5f85180f *tests/testthat/test-recode.R
10f6e8819ca4916e016c7da4e843ef9b *tests/testthat/test-snpPCA.R
b645ff7f2c1bd5ca3efb3c572635380b *tests/testthat/test-snppruning.R
0820c60bcd0b7a7840574e5b5bacc177 *tests/testthat/test-sparseandfull.R
51e7684a71ca1adfae009da625c824f0 *tests/testthat/test-syntheticcross.R
