515ac919eb61923667dcbead49dd7440 *DESCRIPTION
89ec1ca3cd76271a029a733d579a9b4c *NAMESPACE
ef834f6f94e60dd2e8f1cdfb67a964d7 *R/AlignStat.R
9f2b42f4cd65a6ce95e4fa600f16709e *R/Plots.R
ab54df72804425c76efd183af1cde87a *R/RcppExports.R
8676cd61a095283bc078e6b9110df9e1 *R/compare_alignments.R
21b74b8f675d58d7d963db1909aa165e *R/data.R
06bbd98ee535fba21af8cab62e2ba7f3 *README.md
892a426dbec279a2d363fdcac34a8b79 *data/comparison_alignment.rda
6819194f9e96e64718ff578e984d6b49 *data/reference_alignment.rda
c8667fa789a7feaac8b612b34888c12c *man/AlignStat.Rd
94a5034a75ec05d4cec117ac618530c0 *man/compare_alignments.Rd
5bd9a84b11e5718306c3a964ee8ec5e6 *man/comparison_alignment.Rd
97155488abe3401bb3d3ae6d837b5ce3 *man/plot_SP_summary.Rd
b756ec77f2c4f6e5ef0f2f367aea02a0 *man/plot_dissimilarity_matrix.Rd
4e4115073376cacf7b062b70c37e80a4 *man/plot_dissimilarity_summary.Rd
3a1952aab4fdb08be3badb8b032ab44c *man/plot_similarity_heatmap.Rd
cf4f3df37a0a41c93801954d1c5bfaa1 *man/plot_similarity_summary.Rd
c262a146cddb4d85119c2374d5952dc4 *man/reference_alignment.Rd
702801f3a532e509162cbecd86a2c12a *src/RcppExports.cpp
94e4e5fb9bc04bf7170283a96548cd76 *src/rcpp_align.cpp
b981b1c3a741c1c6b675333c367e2971 *tests/testthat.R
b16211cf1d84412dc0578969bdf2f2b3 *tests/testthat/AlignmentA.fasta
1246b2b74adad4b76837d3864a9f9b82 *tests/testthat/AlignmentB.clustal
5aa6ca46ce92a0cdf6db12d9c7d7333a *tests/testthat/AlignmentB.fasta
c9efc874af25ee2d878081c750ce9f2c *tests/testthat/GrammicidinsClustal.fasta
20b6f5c1f35f332ea63c9355446ff19a *tests/testthat/GrammicidinsMuscle.fasta
cff3cf0243ecf481565c3460c37660d2 *tests/testthat/categories.rda
d2084789ce3f5da8c99405a6c2585fb8 *tests/testthat/means.rda
e4890a8c1433c0d046e32ab8c170e4e6 *tests/testthat/prepared_com.rda
009fd0bfb56a280d4f56a50b0b1393f8 *tests/testthat/prepared_ref.rda
8c653e89258dfd9879334ee8a1ba8cfd *tests/testthat/prprepared_ref.rda
68905b272762edcf0a813190e1cd9a41 *tests/testthat/results.rda
00cf465a1eef19f12a11217ffafd0adb *tests/testthat/test-align.R
