49825b16dc4b00be0d9ac5bc9b73783a *CHANGELOG
d32239bcb673463ab874e80d47fae504 *COPYING
adeda672e6bbad538cd69fe49ab2b78d *DESCRIPTION
0473f47078d759a8f631f88427de6451 *NAMESPACE
15267208563420a062f7aacdcf10756c *R/BGLR.R
041d5bd5a8e6086f39ac33c70930007a *R/BLRCross.R
cd2e7e6079c662d7ef05e8ef24800006 *R/Multitrait.R
ac1c68e46a3311b57c7cb37c44f3cebe *R/methods.R
c2d5b3617f88986414f5348c4892e975 *R/utils.R
772745b779596bb1f597f5b9f382a9ec *data/datalist
e37610145e4b583bb4f9e60ebf97ba4a *data/mice.RData
47d220034fc3bd2311fa55afd667760e *data/simulated3t.RData
6dd52a7029d9f70e7634965024000a72 *data/wheat.RData
248408b42ff364072d9a9c43b2438b2c *demo/00Index
d274b632296d113d221bb4518769f501 *demo/BA.R
5ff9fbe7907c2f998a22b80fdda251e1 *demo/BB.R
fb48c8a2f8cb5cd03e2696daaac24ca8 *demo/BL.R
192c18e504fc67c7d8ff7bc2d9a72279 *demo/BRR.R
8ba2369677bdb64416569abac7d203da *demo/BRR_sets.R
406c589b01a88535b9f0e0bb2f218b23 *demo/BayesC.R
7fd7593610118a6e4fb229f22f43c88e *demo/Bernoulli.R
5f4c7fa245517398d5197bc0129b5e64 *demo/RKHS.R
0da64fbf958e905f01d944603cb54260 *demo/RKHS_KA.R
4fa7c12b675b9b182fa5a27e9d8fd9d3 *demo/censored.R
885a602269c88f3f6ee6b9a60eb2c4d7 *demo/ordinal.R
3d99b5ad05fa18a270de1f3dcea37720 *demo/read_bed.R
496d268b01354126cb4a8ac7fa190cbb *demo/read_ped.R
7a807e731ebb7dd9cbfb319a891aee7b *demo/write_bed.R
b19041d6c2ca01b7643fa0818b83f9e1 *inst/CITATION
560bee9beaee08972335925634b4a726 *inst/doc/BGLR-extdoc.pdf
e0afd876c83056ea3294f7903c20b7e5 *inst/extdata/sample.bed
71d452624e9dbea681f7350391e643a9 *inst/extdata/sample.bim
631cbdbb5ee368ba4e3a5ac3325c9081 *inst/extdata/sample.fam
09e48311d02568f943f149920ab16620 *inst/extdata/sample.map
835ab6eee1c651bad27b81a1ae79abef *inst/extdata/sample.ped
ce0b75646243193a823b204ec4f5eb47 *inst/md/BRR_UN_RKHS_UN.md
0bdcc3b709bc0133fd32bcffcbe4648a *inst/md/BRR_UN_UN.md
6d9c79da991365fa3fc729b93ffc9151 *inst/md/BRR_sets.md
d39d174f5c61a6ddec327820b45a761c *inst/md/BayesianAlphabet.md
8e1e7aa0976391128f3a66b0a69934c1 *inst/md/Fixed_effects_multitrait.md
ab3d96f586033b061a6962825b3f4519 *inst/md/GBLUP.md
da92b25c15a44f69530a3f1975445a1e *inst/md/GxE_usingInteractions.md
72bb3fe124cf9fd3d30ac80a5fea585b *inst/md/MULTITRAIT.md
433f6040e0cc42cf00baf5978e436b9c *inst/md/PC.md
5f7b2034b230951742a66550fa6c82a1 *inst/md/RKHS.md
43394cb686d3c175b3e6ddc38cb786c4 *inst/md/RKHS_FA_DIAG.md
a2e3048467683d0de2bf76211f63991b *inst/md/RKHS_FIXED_UN_UN.md
a4396679281e8685e2b3485425d5ba0f *inst/md/RKHS_REC_DIAG.md
8040b0f61a9804a0dcabd62131a52da7 *inst/md/RKHS_UN_DIAG.md
55de48a6fe7a412cddd6d0dbee92448b *inst/md/RKHS_UN_UN.md
7abdb8d761f7375e6911cc7d452e6e1a *inst/md/SS_UN_UN.md
005a6da9e6a1dd3ca5cfedd5292406a3 *inst/md/Validation.md
659a40153636a045dc964a0a4800eb21 *inst/md/categorical.md
72719e35e90ce0e930e7deddd310b660 *inst/md/censored.md
af5c40a1fa092dbdbc65c8e245fae052 *inst/md/effectsBRR.png
38fa6137d5f52eb436f7ca3dd0057e8d *inst/md/example_heteroskedastic.md
6530af1430a9a6257fe2ec3b3437e80c *inst/md/example_saveEffects.md
8e5740941ad19648dc0b5cfcf03e1457 *inst/md/example_sets.md
ba8c5e9e0ada522bba174b31577cf8b7 *inst/md/heritability.md
ba3befaab935b06bbb6e9a73704b9caa *inst/md/heterogeneity_interactions.md
7facdebf9279502b0e27e3bfa17904b0 *inst/md/hyperparameters.md
a4b7b83b6668bb3e748a43d5ea9fff7d *inst/md/mixedModel.md
f75c1beb6488bcb1db8bd4f15014a90b *inst/md/omicIntegration.md
0c245254f7c58a035832178e32602aa7 *inst/md/parallel.md
7918bf9a260d0a5cca8f063235cb549e *inst/md/priors.jpg
bb195dfccd30eeabfa020b108c7d7873 *inst/md/setMethods.md
cd6efddfce01208552fb9d524c1263a5 *inst/md/simulationHumanGenos.md
b97b39c4345fed39587cc7f8a0d76ae9 *inst/md/tesingEffects.md
a734ac86ead8d6cbb740bd29960c6f65 *inst/md/variancePartition.md
2a50f5fafbcfc6a738b377e20b39cd6e *man/BFDR.Rd
8621518b108a627fdd3f949958543be8 *man/BGLR.Rd
f95e8cd001b65068778606898f2204dc *man/BLR.Rd
528fd2a4a368bc03518459f80c4e797d *man/BLRCross.Rd
5cebc865eba655456d69452e3e3bfe92 *man/BLRXy.Rd
e83b10ef7a0fb08edfcda1509702606e *man/Multitrait.Rd
cebbb95db06aeb8c6ada211c4f77c756 *man/getGCovar.Rd
8de3700ed1040a13b816067ae92e2be8 *man/getVariances.Rd
13fa3402bf73e4f9f561c3aae3f52468 *man/mice.A.Rd
de20acb7102c769bbe8cc51f8a4be2db *man/mice.Rd
69c435b1ee77aff7002daa5404a08df8 *man/mice.X.Rd
5012091d43b8d392b506baad1edb817b *man/mice.map.Rd
c17b2f33f060f4a0c217c619ca7bb296 *man/mice.pheno.Rd
ecf97181c49180423cd5025f38ffc2ff *man/plot.BGLR.Rd
fdc6ba815c54a1e762a70a41f33b8794 *man/predict.BGLR.Rd
96130e3380f2081bb7eb38a41db99958 *man/readBinMat.Rd
a9ede7629a4e3837ec3e71007db93fc6 *man/readBinMatMultitrait.Rd
02b2c99663980f7143054b4d3f9fe3ed *man/read_bed.Rd
3a5d57b34eed59338ced190a1c9c0d07 *man/read_ped.Rd
58ebf640046d781e6e0586ffae4511fc *man/residuals.BGLR.Rd
2d8940190c7babffdfebc7948fd8e642 *man/simulated3t.Rd
9d2bc12a813eb2c31a534300ef3c681c *man/simulated3t.X.Rd
73fd0acb93d7ed6f8550ac93499d5adb *man/simulated3t.pheno.Rd
5916a251fa98095de18f4c492dc7c8a1 *man/summary.BGLR.Rd
11387e3ae2e950194e5b9fd47681e9c6 *man/vech.Rd
db9fb825007cea6d3d8005e2826694ea *man/wheat.A.Rd
c3947cac077a79d2d0a23cf6a6e8f7f9 *man/wheat.Rd
37b97b90197c655c2824816f03304048 *man/wheat.X.Rd
1787202aaa9bde500398cb1081639967 *man/wheat.Y.Rd
ddd2d788344c4a9fcf4b35866253d19a *man/wheat.sets.Rd
478cbc50ecc8da9823eb213f8324fcfb *man/write_bed.Rd
d819f9fca6e4b0ce9f587fd5b09e7c7d *man/xpnd.Rd
b8c9cd8a23cd98a4bfd853566e23ef07 *src/Makevars
5fad3621b8994d3afab4b49a50cae10f *src/Makevars.win
cfe4ab4a1f8dc0c03b57f7372f94c4cd *src/init.c
c7c413fb1d79f6ce42701e6b97f58903 *src/sampler_multitrait.c
2ec78447136dc7fc60e4f31b292cfd21 *src/util_plink.c
467bb756b95ee4d21c648ef1312d3cab *src/util_sample.c
d09507a7c8a0b5fb3d5a6a62926c49b1 *src/util_sample_cross.c
0f4a88a0d9ec591f2f6d4f4a192cf00e *vignettes/BGLR-extdoc.Rnw
9619d7b9f8c991a7e229bd45da162012 *vignettes/fig_1.pdf
8f5e58bc1548ff4e87bdf02f6616f5b9 *vignettes/fig_2.png
c1d040a66ab627b0b75e491b711280b3 *vignettes/fig_3.pdf
bb801a7119bc19281fd8c1b7779a8bb3 *vignettes/fig_4.pdf
5d07f37202a849c16435e32010bf8b05 *vignettes/fig_5.pdf
f030b504ada0714071f2ee5070910538 *vignettes/fig_6.pdf
3c84fd0efa9dee6497c82c7c0e8e3c79 *vignettes/references.bib
