Package: BIGDAWG
Type: Package
Title: Case-Control Analysis of Multi-Allelic Loci
Version: 1.5.5
Date: 2016-08-29
Author: Derek Pappas <dpappas@chori.org>, Steve Mack <sjmack@chori.org>, Jill
    Hollenbach <Jill.Hollenbach@ucsf.edu>
Maintainer: Steve Mack <sjmack@chori.org>
URL: http://tools.immunogenomics.org/,
        https://github.com/pappasd/BIGDAWG
BugReports: http://github.com/pappasd/BIGDAWG/issues
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control
    association tests of highly polymorphic genetic data [e.g., human leukocyte antigen
    (HLA) data]. Performs association tests at multiple levels of polymorphism
    (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach
    JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a 
    common class to account for sparse cells in tables as described by Hollenbach JA, 
    Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
License: GPL (>= 3)
LazyData: True
Depends: R (>= 3.2.0)
Imports: XML, haplo.stats, parallel
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-30 04:12:47 UTC; Pappas Family
Repository: CRAN
Date/Publication: 2016-08-31 01:18:29
