1b09c7d6608325417fc57eb99d9cd11f *DESCRIPTION
d32239bcb673463ab874e80d47fae504 *LICENSE
facc79f681d12597c557abd9ebea1833 *NAMESPACE
08b9e1fbf255e7a69ff8744cfe583136 *NEWS
77aa0a55a69e2f567e6fe4096ea6c80d *R/Arena.R
2f3b257eebeaf81fe45e2aca2fd87eb0 *R/BacArena.R
2c8b75d1107442bd13b7e91d0205bf8b *R/Organism.R
08fea68d1298cc5d913f2d115adde694 *R/RcppExports.R
794d99f3f6ff4df9ecc366b752f9547f *R/Stuff.R
19a911681ae473f5f1bee522e5634ff3 *R/Substance.R
b90877d9cb69299b8a937ef895bd4911 *R/data.R
c8463c78232d31908158e46cf5338db6 *README.md
d222a1f5b526aa2af95d4fb7f01edc96 *build/vignette.rds
08e75fbaa2667be2d1a758272761597e *data/colpal.rda
0826f8a0ee7c1ff30862b615207e905d *data/datalist
a43071bfc86b6479456de6449bb55276 *data/sihumi_test.rda
d27f20d45c9b96c87a00a3ef457c4fb5 *inst/doc/BacArena-Introduction.R
3b3998c9c5898ceb9b4be7c68acf0d96 *inst/doc/BacArena-Introduction.Rmd
66e91161361b70884b95e136e86b4de5 *inst/doc/BacArena-Introduction.pdf
6fb2df66969ff69cc2e4de5a596388a9 *man/Arena-class.Rd
dd1a099298e2b745df223192acc4b41c *man/Arena-constructor.Rd
05bb17bc35182fda580ed7dbc29ae733 *man/Bac-Constructor.Rd
1258787e680eae9c5f93895f3fb661fc *man/Bac.Rd
396202730de3a207b53e3389b7a23c68 *man/BacArena.Rd
29246c298e733c7a6b765d12c50e7406 *man/Eval-class.Rd
51127bebe224fb48fc6cdfc17cb8bea6 *man/Eval-constructor.Rd
3df377e97aef1b9a89636b5db7a585d7 *man/HeatMapFeeding.Rd
1e5cac5ec4dbf1feffd9ee47f02c0ddf *man/Human-constructor.Rd
dbec8194f0564ee5992ce899b8b930f4 *man/Human.Rd
15fef0fd60175642009d4a27c554964d *man/NemptyHood.Rd
911340342c8296eb3f2bae7bc7f7eb2e *man/Organism-constructor.Rd
ca3e754c7b653d28e692b7ce69b1c726 *man/Organism.Rd
edf0b84755da016a3f79eadd0f6603ed *man/Substance-constructor.Rd
05f13a2e7a205c76c52886e0cb58541f *man/Substance.Rd
45ba8753d6d3c331b488773bc4e08b2e *man/addDefaultMed.Rd
6d7d6db6a1d02ff6fa9be1922fc73ef0 *man/addEssentialMed.Rd
424dfa8bc96535c947b22a7b2289144f *man/addEval.Rd
0eb72d21bb33e1bc171152a569ad3840 *man/addOrg.Rd
c9051ae4e22af97d11f63ced8863fead *man/addSubs.Rd
1e5c6f3b9c8c3b78d6312e49bc3e863b *man/cellgrowth.Rd
1e2d1b658ca622bfa92d2ff809cf272c *man/changeDiff.Rd
9dd061a7c65d5855aa3225c4495de996 *man/changeFobj.Rd
dcee034eaf1e80895e904577cccb9d43 *man/changeOrg.Rd
4115f35900c68ffffb1bd07d97b98ae6 *man/changeSub.Rd
ee9aa53c6a51f8686d9e251308a0e73f *man/checkCorr.Rd
dc6282261088beae200d9c9573311acd *man/checkPhen.Rd
543d44f2a762813f6c97a1e4b71adbe3 *man/checkPhen_par.Rd
6f2e7a04de05bc1ad5c63b23bc40b7ed *man/chemotaxis.Rd
7a557d6b01f2ba3c256cde852a0dbdbc *man/colpal1.Rd
0b718c58c24a95d2986c4ed0d985c070 *man/colpal2.Rd
923e4f631866e70827530ef2b8afcdfa *man/colpal3.Rd
f6dd771df73aa602f402e9e55f6d989e *man/colpal4.Rd
0bcd843d406c964a4f163fc3315a3662 *man/colpal5.Rd
8f816481167ab175bdefad80ad6b5b57 *man/colpal6.Rd
8033dc6f013106049422f3de79c5038f *man/constrain.Rd
bfede21f4826daa1d88a17c7d29995e5 *man/consume.Rd
8048a5fa46f89471f7378ff0a86e35d3 *man/createGradient.Rd
1d8bb40f782081ca065138162b06c5ec *man/dat2mat.Rd
0541c9262cef6702e4b9fe8c15e618b3 *man/diffuse.Rd
5bdda05c35e0833f8f8bce5f2e245103 *man/diffusePDE.Rd
b80ff3aa80f70f3618579c0a78a5a45e *man/diffuseR.Rd
4cc4b3cfe131a67350ec2a3878199a0b *man/diffuse_par.Rd
f46fcc6c95376b6d7c26aa002e6d136c *man/emptyHood.Rd
310e52ab7c52616c92e380539b8d56c4 *man/evalArena.Rd
56bee7b6deaf2de73d8fb0fc37d35fd3 *man/extractMed.Rd
60a46614d7ffd35f358c4355c01a1de3 *man/findFeeding.Rd
363f5d23d4f04524fc5c2a529cd6957d *man/findFeeding2.Rd
13905a6d6ffa56e3e301dcf0d6af9320 *man/findFeeding3.Rd
9106584e2059768eda20da3278ce1b0d *man/findFeeding3rep.Rd
092b122d2d3f366b22dbe64a6cbf9ae5 *man/findInArena.Rd
e4da8ab72a4e26c976a2e58ec0e741b7 *man/findRxnFlux.Rd
7ac13bd42b24466a8097b8e239d0d2b9 *man/findrBiomass.Rd
5b9078d99d15451095087121a041feb6 *man/flushSubs.Rd
54f801b682fda743dfce38e5dde575d1 *man/fluxVarSim.Rd
290166cae4ce57b99e82deb72ea69502 *man/getArena.Rd
dec7c4c0f59181798c5888e2035d5c28 *man/getCorrM.Rd
ae70e3cb315b636d56738aab97b1565b *man/getPhenoMat.Rd
537510ada73305f1ae5b95fbdcfd58ea *man/getPhenotype.Rd
6dac780b105b44380cc373fc2636b6d7 *man/getSubHist.Rd
19f43e4e02bd4e6b674fa42259767544 *man/getSublb.Rd
12fd282c2625030e79a387d991efddc6 *man/getVarSubs.Rd
2f6fbed91801ce4fa7859aeb846605ee *man/growExp.Rd
2dd8afade9f1410c29c952c1de20bd1c *man/growLin.Rd
cb22cd2497fa8426d9c1f5955fefc249 *man/growth.Rd
529c96d247ddfa11c2bbe0b42e8d7115 *man/growth_par.Rd
956206afb4cace92f761dec17630effd *man/lsd.Rd
a9965be005ba7122dfb1d723da5b16f6 *man/lysis.Rd
b6313cff2161591fec78645a6afd421e *man/minePheno.Rd
23d6584b334e5a33bc32ecdbc5c76c53 *man/move.Rd
7c3c776a4a494c75efe1f5a30a89f1e6 *man/openArena.Rd
3ec08df7e04afa867bce7ea541c2069a *man/optimizeLP.Rd
1774e95269e04c6d104060082407ed30 *man/plotAbundance.Rd
13f10f2d276786900e3e269ec63d848f *man/plotCurves.Rd
9ea75a0e79865e94a8e9d4b96d011a1f *man/plotCurves2.Rd
dfe6d75579ceb143e18a919b5ddc4983 *man/plotFVA.Rd
f410b60b6249fd69bab3bd56b61d0473 *man/plotFluxVar.Rd
725d639d6110ad895daaf2b93a62e7eb *man/plotGrowthCurve.Rd
46e968efd0e4b06a45c9d4cd96bf6dd9 *man/plotInterNum.Rd
e5f6105748b67ba1122d4ff0adac89c2 *man/plotPhenCurve.Rd
41d312d2907151837c1d0d256553c331 *man/plotPhenNum.Rd
b886b0e88832f5084aef6b037fb8f9d5 *man/plotReaActivity.Rd
dda1ffe994dfda0c86351d096ee93897 *man/plotShadowCost.Rd
ffb0f5b54130b3b3cc16e3769211eca8 *man/plotSpecActivity.Rd
35c3b2b7fc8eb20e2f123bf66833b073 *man/plotSubCurve.Rd
8fcc8ddeda84a9ecebdcf7f4e577075a *man/plotSubDist.Rd
1b2dc8c6006865220a14a55e574c3c77 *man/plotSubDist2.Rd
81082b9dc6255753ed4d427fb1a39d36 *man/plotSubUsage.Rd
0da56c6f4c06ce09c1d4a790ff898949 *man/plotSubVar.Rd
91eae04ea56dbdc521e2acbf03cd0b09 *man/plotTotFlux.Rd
5d7ea0f0d3ea950d619a67b8fa011c99 *man/redEval.Rd
8ab9708aeded4d3218b3c9e82f6b7fb5 *man/reset_screen.Rd
5b4f53593380e3c47b3d087eb779d6ab *man/rmSubs.Rd
f891780c16eebe67dadd7e3e7750ced3 *man/selPheno.Rd
75731f7f05e69a1e635da0809f18de13 *man/setKinetics.Rd
2d1a4b1e01daa92fc7e9a13843d5a59c *man/sihumi_test.Rd
7f7a3ba7721897d1120e9ef390eb59c7 *man/simBac.Rd
fb01113f210b1442ecf96573367cb279 *man/simBac_par.Rd
42516b428411fb297350c8cd00d0f65f *man/simEnv.Rd
5953e08fd7eb9ada6dec7d8213fac2ab *man/simEnv_par.Rd
d36a98cc562110884f155fdb850c2fb5 *man/simHum.Rd
35e344d1d950175269020a520a481235 *man/statPheno.Rd
47f4603d900f0e5de0d4032a3219deb9 *man/stirEnv.Rd
f9b9c8cddac2f42bac3f14d25483d284 *man/unit_conversion.Rd
d619552be28ae8b1036a9cdc71b1085b *man/usd.Rd
924209c5bad698313b6f9d0cd2b7d519 *src/RcppExports.cpp
13aeea7eb96b66ba98098659d3cbe2ce *src/addBac.cpp
93fe24d90a8dbb8a8e301c955568cd07 *src/diff.cpp
af7cf759c6fef52c14ed3a6bb40dc2a7 *src/duplicate.cpp
77e6d68dd1da9733aec3c51956f40bc2 *src/move.cpp
3b3998c9c5898ceb9b4be7c68acf0d96 *vignettes/BacArena-Introduction.Rmd
