# Generated by roxygen2: do not edit by hand

export(Arena)
export(Bac)
export(Eval)
export(HeatMapFeeding)
export(Human)
export(NemptyHood)
export(Organism)
export(Substance)
export(addDefaultMed)
export(addEssentialMed)
export(addEval)
export(addOrg)
export(addSubs)
export(cellgrowth)
export(changeDiff)
export(changeFobj)
export(changeOrg)
export(changeSub)
export(checkCorr)
export(checkPhen)
export(checkPhen_par)
export(chemotaxis)
export(constrain)
export(consume)
export(createGradient)
export(dat2mat)
export(diffuse)
export(diffusePDE)
export(diffuseR)
export(diffuse_par)
export(emptyHood)
export(evalArena)
export(extractMed)
export(findFeeding)
export(findFeeding2)
export(findFeeding3)
export(findFeeding3rep)
export(findInArena)
export(findRxnFlux)
export(flushSubs)
export(fluxVarSim)
export(getArena)
export(getCorrM)
export(getPhenoMat)
export(getPhenotype)
export(getSubHist)
export(getSublb)
export(getVarSubs)
export(growExp)
export(growLin)
export(growth)
export(growth_par)
export(lsd)
export(lysis)
export(minePheno)
export(move)
export(openArena)
export(optimizeLP)
export(plotAbundance)
export(plotCurves)
export(plotCurves2)
export(plotFVA)
export(plotFluxVar)
export(plotGrowthCurve)
export(plotInterNum)
export(plotPhenCurve)
export(plotPhenNum)
export(plotReaActivity)
export(plotShadowCost)
export(plotSpecActivity)
export(plotSubCurve)
export(plotSubDist)
export(plotSubDist2)
export(plotSubUsage)
export(plotSubVar)
export(plotTotFlux)
export(redEval)
export(reset_screen)
export(rmSubs)
export(selPheno)
export(setKinetics)
export(simBac)
export(simBac_par)
export(simEnv)
export(simEnv_par)
export(simHum)
export(statPheno)
export(stirEnv)
export(unit_conversion)
export(usd)
exportClasses(Arena)
exportClasses(Bac)
exportClasses(Eval)
exportClasses(Human)
exportClasses(Organism)
exportClasses(Substance)
exportMethods(HeatMapFeeding)
exportMethods(NemptyHood)
exportMethods(addDefaultMed)
exportMethods(addEssentialMed)
exportMethods(addEval)
exportMethods(addOrg)
exportMethods(addSubs)
exportMethods(cellgrowth)
exportMethods(changeDiff)
exportMethods(changeFobj)
exportMethods(changeOrg)
exportMethods(changeSub)
exportMethods(checkCorr)
exportMethods(checkPhen)
exportMethods(checkPhen_par)
exportMethods(chemotaxis)
exportMethods(constrain)
exportMethods(consume)
exportMethods(createGradient)
exportMethods(dat2mat)
exportMethods(diffuse)
exportMethods(diffusePDE)
exportMethods(diffuseR)
exportMethods(diffuse_par)
exportMethods(emptyHood)
exportMethods(evalArena)
exportMethods(extractMed)
exportMethods(findFeeding)
exportMethods(findFeeding2)
exportMethods(findFeeding3)
exportMethods(findInArena)
exportMethods(findRxnFlux)
exportMethods(flushSubs)
exportMethods(fluxVarSim)
exportMethods(getArena)
exportMethods(getCorrM)
exportMethods(getPhenoMat)
exportMethods(getPhenotype)
exportMethods(getSubHist)
exportMethods(getSublb)
exportMethods(getVarSubs)
exportMethods(growExp)
exportMethods(growLin)
exportMethods(growth)
exportMethods(growth_par)
exportMethods(lysis)
exportMethods(minePheno)
exportMethods(move)
exportMethods(optimizeLP)
exportMethods(plotCurves)
exportMethods(plotCurves2)
exportMethods(plotShadowCost)
exportMethods(plotSubDist)
exportMethods(plotSubDist2)
exportMethods(plotTotFlux)
exportMethods(redEval)
exportMethods(rmSubs)
exportMethods(selPheno)
exportMethods(setKinetics)
exportMethods(simBac)
exportMethods(simBac_par)
exportMethods(simEnv)
exportMethods(simEnv_par)
exportMethods(simHum)
exportMethods(statPheno)
exportMethods(stirEnv)
exportMethods(unit_conversion)
import(Matrix)
import(Rcpp)
import(ReacTran)
import(deSolve)
import(methods)
import(sybil)
importFrom(graphics,barplot)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add.edges)
importFrom(igraph,degree)
importFrom(igraph,delete.edges)
importFrom(igraph,delete.vertices)
importFrom(igraph,graph.data.frame)
importFrom(igraph,graph.empty)
importFrom(igraph,layout.circle)
importFrom(igraph,layout_with_fr)
importFrom(igraph,vcount)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,rnorm)
importFrom(utils,combn)
importFrom(utils,data)
