Citation
========
Anand K. Gavai(2011) BiGGR: An open source initiative for constraint-based
modeling in R using the BiGG database, Version 3. Software package for R.
Wageningen University, Wageningen, The Netherlands.

Copyright
=========
File BiGGR/data contains data from:
H. sapiens Recon 1:Duarte, N.D., Becker, S. A., Jamshidi, N., Thiele, I., Mo, M. L., Vo, T. D., Srivas, R., Palsson, B. O., "Global reconstruction of the human metabolic network based on genomic and bibliomic data", Proc. Natl Acad. Sci. 104(6):1777-82 (2007).

M. barkeri iAF692:Feist, A.M., Scholten, J.C.M., Palsson, B.., Brockman, F.J., and Ideker, T., "Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri", Molecular Systems Biology, 2(1):msb4100046-E1-E14 (2006).

E. coli iAF1260:Feist, A.M., Henry, C.S., Reed, J.L., Krummenacker, M., Joyce, A.R., Karp, P.D., Broadbelt, L.J., Hatzimanikatis, V., Palsson, B.. , "A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information" Molecular Systems Biology, 3:121 (2007)

H. pylori iIT341:Thiele, I., Vo, T.D., Price, N.D. and Palsson, B.., "An Expanded Metabolic Reconstruction of Helicobacter pylori (iIT341 GSM/GPR): An in silico genome-scale characterization of single and double deletion mutants", Journal of Bacteriology, 187(16): 5818-5830 (2005).

M. tuberculosis iNJ661:Jamshidi, N, Palsson, B.., Investigating the Metabolic Capabilities of Mycobacterium tuberculosis H37Rv Using the in silico Strain iNJ661 and Proposing Alternative Drug Targets., BMC Systems Biology, 1:26 (2007).

E. coli iJR904:Reed, J.L., Vo, T.D., Schilling, C.H., and Palsson, B.., "An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)", Genome Biology, 4(9): R54.1-R54.12 (2003).

P. putida iJN746:Nogales, J. , Palsson, B.., and Thiele, I., A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory., BMC Syst Biol, 2:79.doi:10.1186/1752-0509-2-79 (2008).

E. coli textbook:Orth, J.D., Fleming, R.M.T., Palsson, B.. Chapter 10.2.1, Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide, EcoSal, doi: 10.1128/ecosal.10.2.1 (2010).

S. cerevisiae iND750:Duarte, N.C., Herrgard, M.J., and Palsson, B.., " Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-scale Metabolic Model", Genome Research, 14: 1298-1309 (2004).

S. aureus iSB619:Becker, S.A. and Palsson, B.., "Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation", BMC Microbiology, 5(1):8 (2005).


All other files: Copyright (C) 2011 by Anand K. Gavai<anand.gavai@bioinformatics.nl>


License
=======
This software is provided in good faith to researchers free of charge.
It is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. It may be used by anyone if credit
is given.

Acknowledgement
===============
This work was supported by Netherlands Consortium of Systems Biology, The Netherlands, Vrije University Amsterdam, The Netherlands and Wageningen University and Research Center, The Netherlands.