f0746c88ceb666b4e3bf8dfefafeb868 *DESCRIPTION
eb7c414ea959aa1b26ee53a7bb38480c *NAMESPACE
5888d6e5f42ceb56d6bbb5d4decebd65 *NEWS
c1352e1b90b2c511c6e3f77091458100 *R/001-BioMedR-package.R
a1f8bb51cddba9514f4cef3513b1089c *R/1001-clusterMDS.R
acf5e2fdd6d4b3b2ed205652a109974a *R/1002-clusterCMP.R
a7e79a5c5303a372bd3047115b9a143b *R/1003-clusterJarvis-Patrick.R
336118a8b089d8057857b871040aa232 *R/1004-clusterStat.R
f73c6b46daca33fea4149bf96ae83c38 *R/101-getDrug.R
1ea5d8ccd79788b1bcc3a8f3956bba45 *R/102-getProt.R
16307d3536172448d01661d4c3c4a9ee *R/103-getDNAGenbank.R
0516dc0f285f8c8c932bdcf5b9d1cbc8 *R/1101-randomForest.R
974a6f1c1dd84787fb01856464e7d5e1 *R/1102-PLS.R
3a8d6cdea6d2abe3f9fc054269530e6a *R/1103-rffs.R
a33560bdf8ff8d16727ab367264aebf6 *R/400-extractDrugAIO.R
365d6338185da8ad87b55eb4a68e41c3 *R/401-extractDrugALOGP.R
f44e3a216f2808eae13a1278034eb501 *R/404-extractDrugAminoAcidCount.R
aa14330684817b05e1259428430af17f *R/408-extractDrugAutocorrelationCharge.R
533f22430b650d0371ac6163975b1086 *R/411-extractDrugBCUT.R
3a6ad5862b8a52344dad8e4e8abf7d60 *R/415-extractDrugCPSA.R
43117cdb3debd1b200893c349f20e279 *R/416-extractDrugCarbonTypes.R
d80e9e51749e16ce4421858a023a7e93 *R/417-extractDrugChiChain.R
f8deb4b9c9348ff331662a3290a1fa1c *R/424-extractDrugGravitationalIndex.R
c07c854e3da008716abdce41bd91fbdf *R/427-extractDrugHybridizationRatio.R
bb317cf67d9de0fb974729c1f813b264 *R/428-extractDrugIPMolecularLearning.R
e655bef4e4b9c0b19024cfdea4c1bb22 *R/429-extractDrugKappaShapeIndices.R
0736dfbeea622fb251dceb228dedc1fa *R/430-extractDrugKierHallSmarts.R
deed8a8e49be18257996af1565705873 *R/436-extractDrugMannholdLogP.R
f543cca8a0df4207bce3a30765b2c25b *R/445-extractDrugWHIM.R
9278b8586b80c9ef4321adf403994881 *R/471-extractDrugStandard.R
2b01a2cea5c8dc9aa322b25a88cc3fee *R/472-extractDrugExtended.R
bdda043de5249a7c5e141c1d2e46f293 *R/473-extractDrugGraph.R
21f2eed77113988e5ea2a7538548dbce *R/474-extractDrugHybridization.R
17d28212e4d8ea7f243a348dbd835644 *R/475-extractDrugMACCS.R
78558ea578300b76ce16ee6058802fd6 *R/476-extractDrugEstate.R
371900b961620c0104ae11558be9e544 *R/477-extractDrugPubChem.R
f15cf341f82c5047b33162307b1fc5d6 *R/478-extractDrugKR.R
348a70508421ad158dc837aa32bd64fc *R/479-extractDrugShortestPath.R
66e2407ea48086f39d969802fd913e4f *R/485-extractDrugAP.R
709faa31c75035dbfbae9475c9f9519f *R/501-extractProtAAC.R
f02c0b6b910d95583d061ac79f70d596 *R/502-extractProtDC.R
32fb5e6ea9167c09452e01a8989de958 *R/503-extractProtTC.R
98b7fd2fc4cb3cd05e50bba1e96ca9ff *R/504-extractProtMoreauBroto.R
cdc6d758d916efd5253f473acfd3ad1a *R/505-extractProtMoran.R
276322435e0f469720288f85ef3a76be *R/506-extractProtGeary.R
0202450257de71debc5993b6a7c1c67d *R/507-extractProtCTDC.R
230133599999697b385ec30376266577 *R/507-extractProtCTDCClass.R
c6514db26cc852c39c418eda1c082e0a *R/508-extractProtCTDT.R
76dfe523f4d6cdb0a1f7ec539fc73022 *R/508-extractProtCTDTClass.R
14c74fcb4253e02627ab73a7059ef378 *R/509-extractProtCTDD.R
2269ef56766c897f93dd09daf819a238 *R/509-extractProtCTDDClass.R
cd503557cec451deacc56fb33a908ac7 *R/510-extractProtCTriad.R
95d9f8d42edbfde8ba8ae9b350169dbb *R/510-extractProtCTriadClass.R
9f2c2fc9071b85a684b6fd8db00aed7e *R/511-extractProtSOCN.R
3d95b9d33e36f0b847ea1175261fc138 *R/512-extractProtQSO.R
c0f873c05f99f3b142a386ec20f4ea6c *R/513-extractProtPAAC.R
627fd34f109ec407c9ae46e0062ad3c8 *R/514-extractProtAPAAC.R
ebcc4e0a871e069b009640f0f6e0065b *R/515-extractPCMScales.R
06581e57c996669ee999dd8e9e408383 *R/515-extractPCMScalesGap.R
e056c505891080a251da91cd98c6cb92 *R/516-extractPCMDescScales.R
3321101ed6b5d68db76f1b7142abbabf *R/517-extractPCMPropScales.R
9a36c4073df2a32f58d748fbbd208335 *R/517-extractPCMPropScalesGap.R
5940c045acfefebf845757927df185ef *R/518-extractPCMFAScales.R
392ae0ac34172b5abe6d63830846513a *R/519-extractPCMMDSScales.R
929582d12edeb15b8d1a7a724b3431e6 *R/520-extractPCMBLOSUM.R
94d25ca2af52447a9c09e80512826878 *R/521-extractProtPSSM.R
ced97a6507054f1435525f3069c2c683 *R/522-extractProtPSSMFeature.R
ed7def938ea83f79d6d0cd0ceb333b07 *R/523-extractProtPSSMAcc.R
f49554e8f14053764abef38ab8e2b6c6 *R/600-make_kmer_index.R
e0a832772cc0b147113d7807fc52976b *R/601-extractDNAkmer.R
83430b521a8e164bcf0ba077f8df1b4f *R/602-extractDNAIncDiv.R
075dd4925a838e054923359c12d41e8d *R/603-extractDNADAC.R
13c8877bf1fb2c6bb49615e2cbdf172e *R/604-extractDNADCC.R
66c96dca5fe875d86549fd27ae331ff4 *R/605-extractDNADACC.R
9f83b1d29af06fbc30645fc2e34fb2f2 *R/606-extractDNATAC.R
bec2a7afcbabdc0e8bfffea1c8763d12 *R/607-extractDNATCC.R
cb093e2053752fa2e516b9aba0536c48 *R/608-extractDNATACC.R
caa20ed8decc701637a74b344c227f74 *R/609-extractDNAPseDNC.R
725c720c8cbfdba86591c5c0249ed9bc *R/610-extractDNAPseKNC.R
2e7a1574479bc5d90951ccdd3d6ca172 *R/701-readFASTA.R
20174095c179cd5ff7bf16d0480b0b31 *R/702-readPDB.R
acd653ef7113082c99b2c1d356210d41 *R/703-readMolFromSDF.R
a300908dbd12777bc0358bce4a831c5b *R/704-readMolFromSmi.R
5c1eff84a436f5fc11f43852c8457a3e *R/705-searchDrug.R
b90ca1bed7f0210c282e4528aa8aaf9b *R/706-checkProt.R
207c29fc492618be86da99a041a4e7a7 *R/707-checkDNA.R
40526b222cda054812a9e3035f01e409 *R/708-revchars.R
0d461ef88ab3bd571ce9a44771381fb2 *R/710-segProt.R
a6f26ce78af08f3c396d926e7d043bf0 *R/711-acc.R
173f90f21d706e51e8049622d50642de *R/712-plotStructure.R
88424c4b4f630596292e5ec5c65f0a40 *R/713-convSDFtoAP.R
f2f9630d9d8b6d9529b0662724cfb755 *R/714-convAPtoFP.R
e0a2c6bf331c8fef6608c923b13fbaa9 *R/801-getCPI.R
66e347ccb1f3e5e8e4507f61116bceef *R/901-calcDrugFPSim.R
ce7c6266d77d0b955280a5b398f66ff9 *R/903-calcProtGOSim.R
b61beee99c2af2107998180c21bb4bce *R/904-calcProtSeqSim.R
b2ae58752606ce05ce54cbc3b9dc77ca *R/906-parSeqSim.R
073402304a26f6835d2c6dea01f911e6 *R/907-parGOSim.R
50ccd7322aa49d071841cbaabedd1b93 *R/BioMedR-datalist.R
94e25ce67835419436c79b997b740ea5 *README
74fd2419e84eb552d3d7bf73b5f12180 *data/AA2DACOR.rda
5b7c6f94b51a6cc85f679be46f8ca65a *data/AA3DMoRSE.rda
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39fa7d8f8e97b1809c4a2ad1a93a5bce *inst/doc/BioMedR.Rnw
d9101d1a0c00f382fc857139b417d600 *inst/doc/BioMedR.bib
a29f6fbcd244eec4608cc15108f785c8 *inst/doc/BioMedR.pdf
ca35c56c0c379f292f8fab68b3a19f61 *inst/examples/BioMedR-package-ex.R
ca7df8eb66eb741ea44d8cf18eb2b90a *inst/protseq/1atp.pdb
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9e8752c7ab7ca7e43abb5358a1e72bdd *inst/sysdata/CTIndex.rda
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7957cc59a12a8726b53d21149df781f9 *inst/sysdata/Schneider-Wrede.csv
7e236ea7dd880e47c29e5d66af53b4bd *inst/sysdata/TCDict.rda
57f46233aaf936f39be8a8722cadbbad *inst/sysdata/test.sdf
2204f25c44f4af5121b3abc1a5785ac1 *inst/sysdata/training1.csv
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7e72d8208d929d9318a5c9aeb942115f *inst/unitTests/test_acc.R
9dda75fa604e110d55a54c22e82675e7 *inst/unitTests/test_checkProt.R
1dc9a8b9289ecde8fb7c10b4273eea91 *inst/unitTests/test_extractPCMBLOSUM.R
4301e541f0640987cd746d3ce3a6d6ed *inst/unitTests/test_extractProtAAC.R
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51440b72c354596028e1d71409be41a4 *inst/unitTests/test_getPPI.R
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be6eadb0c7581ebe99e6ffbd46c66ccc *inst/vignettedata/CPDBAS.smi
3c602ceabf971e1d8764a9942e824bec *inst/vignettedata/Cytoplasm.fasta
61b550dea7417a1b0cfc0ee0b9e3923f *inst/vignettedata/FDAMDD.csv
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8150b50c5396b8915a0c81fc60fd2c8a *inst/vignettedata/GPCR.csv
ae6fff5a4d2423bae24ff60f629f00b5 *inst/vignettedata/H_sapiens_neg.fasta
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47fe87b40d12932df4490cb6a0139263 *inst/vignettedata/test.smi
6b6982c3d44e3e081d26911e14e37d30 *man/AA2DACOR.Rd
8ae3f9933ad03bb5c8c882c3f563c7de *man/AA3DMoRSE.Rd
0e46896cb9064ca8e2cc384815742f53 *man/AAACF.Rd
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1a7c684309ca365ed9279152618282d4 *man/AABLOSUM62.Rd
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9cba382d79d3bb423a2fd14cbc322030 *man/AABurden.Rd
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7bb1a3361277658b7e4cd330c3deb476 *man/AAPAM250.Rd
2bd2aa333cacb32b06f6f3c3f262f5f8 *man/AAPAM30.Rd
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49814d1f816855cdf73ec3c5932dafda *man/AATopoChg.Rd
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fe2a757816b94d4fde17676776198595 *man/BMgetDNAGenBank.Rd
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ac4542aa30c3249275fd5f943b8fb28e *man/OptAA3d.Rd
aaef61916fc9c568c1c00bd31fdcdd15 *man/acc.Rd
e36a8a286dc42258693ca16894c07c0d *man/apfp.Rd
10d3ac7f0ead5bcea22dcd6052fad879 *man/atomprop.Rd
fca2010f21eaa378989a9839a23ab71e *man/bcl.Rd
f55fc93233f752bf9958cd7473a1484b *man/calcDrugFPSim.Rd
626603b1af0b75251e254d66ba0b501f *man/calcParProtGOSim.Rd
33910ad71afb422455107da14871ce1c *man/calcParProtSeqSim.Rd
d0364c90ada94c402312a62fbad93040 *man/calcTwoProtGOSim.Rd
498fb0cec0532cd7d3552ac78deb769c *man/calcTwoProtSeqSim.Rd
90ce2cf0f64fa58bdf5f1f24bd39dcd6 *man/checkDNA.Rd
bea1bee367405753b1ddf976c66b58cb *man/checkProt.Rd
21f4efdb246aa155c301bffeddd662d4 *man/clusterCMP.Rd
3cb7df7d668c5c216af56d67ae132009 *man/clusterJP.Rd
dbdb11d626b10af57ac618976cce6e3c *man/clusterMDS.Rd
12a414502b3eb49880267050103789c0 *man/clusterStat.Rd
7c265dd136858bf484d056b86c045bfd *man/connectivity.Rd
a71b7ad98ee11daeebb7c523872fc165 *man/convAPtoFP.Rd
5a9f7b42f61278912e0b7c08e9dc8ae9 *man/convSDFtoAP.Rd
acfc91e66064a081c383e6a9e0d7fd16 *man/diversity.Rd
ffc1eea9722e0505412d5892808e5498 *man/extrDNADAC.Rd
1cd9a352069165c68a786ffde3c907ae *man/extrDNADACC.Rd
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