99de92d4ddff86aaa775a2e1b3306577 *DESCRIPTION
9202c9613ad08822cf700ed153981f6b *NAMESPACE
42e983f3116f753f1517b195df65803f *R/brundle-data.R
2edd58a07fceeb4050ffc1b0a69c7d50 *R/brundle.R
40ba34c8071c5982e44411a1382f42ec *README.md
32a5d53a8dd6356400e0874aa5a374c9 *data/dbaExperiment.rda
86120c7b8d0852372528e50db585263f *data/jg.conditions.rda
e980d2f770ad77c0747bc061dcf008d0 *data/jg.controlCountsTreated.rda
80f5b1b3972180ab5fd215267633330b *data/jg.controlCountsUntreated.rda
7edfc32ea5b5051f653b5f97b7c81579 *data/jg.controlPeakset.rda
7f826106be77cd1ae063516f02e49bc8 *data/jg.controlPeaksetDeSeq.rda
5d2766a745dd7e4bdda05b099db0a61e *data/jg.controlResultsDeseq.rda
2b39084dedae8a50918ed87e3bfe21a9 *data/jg.experimentPeakset.rda
17e3e640c2c80047c017e10925ba37dc *data/jg.experimentResultsDeseq.rda
37cdede7b2c65c0dacf6a26ff6432ef9 *inst/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
8979c16871994f80bebef27b9bd63ff0 *inst/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
f8489efededf46c7f266abe8e1be57d5 *man/dbaExperiment.Rd
fd3fffa3f07f28d23a127422c71e7223 *man/jg.applyNormalisation.Rd
4e9b9046a88092b496989ac012c42119 *man/jg.conditions.Rd
6de2e93e1f66bd4b8186d2e77db91dcd *man/jg.controlCountsTreated.Rd
b756187ec576bf31349aa54e2201bf69 *man/jg.controlCountsUntreated.Rd
46821720c2b973af76171ce9841f5d9e *man/jg.controlPeaks.Rd
1e777ddd4bd67b4dc59887ea1c08c426 *man/jg.controlPeakset.Rd
d519443767595e179126d4eeb42f199b *man/jg.controlPeaksetDeSeq.Rd
ef61a79c831cf1357de2ad392cafca46 *man/jg.controlResultsDeseq.Rd
b087078d3f46f3507716b0e4c09c86fd *man/jg.convertPeakset.Rd
bf8346577d9bd5e4627e562b49ee9b69 *man/jg.correctDBASizeFactors.Rd
a7f2c7393caa3460434ef3394c98d5cd *man/jg.countAlignedMReads.Rd
6bdb094d17a1932f0999b2679166f856 *man/jg.dbaGetPeakset.Rd
83f829a2fedcd6433bcc79f4cf8e0cad *man/jg.experimentPeakset.Rd
c9def0a2e11cac28b10b0f072ed55ff6 *man/jg.experimentResultsDeseq.Rd
91854db78227393d9c313d7e2b17a1b6 *man/jg.getControlCounts.Rd
e93afc5267546619b542df4a363a3365 *man/jg.getCorrectionFactor.Rd
05e57364e0646510c05198f6efb5dab1 *man/jg.getDba.Rd
29fb7a7e0c4ee3069d79871ec66f5e11 *man/jg.getNormalizationCoefficient.Rd
5ce73552142512995f1a541e3850c20f *man/jg.getSampleIds.Rd
1928e89133b75c97bdcb90507ce2a692 *man/jg.plotDeSeq.Rd
243e3e8969e43faac8a3f67b1e1dd94a *man/jg.plotDeSeqCombined.Rd
e42c7b93cd8d6830629e1ff116ffc6e3 *man/jg.plotMA.Rd
5f3af27d92060ef1699eff5a1942b628 *man/jg.plotNormalization.Rd
e562aa87df29721c61bddc87629d42d6 *man/jg.runDeSeq.Rd
