628e49636ecf0486a5c9c6abe416cf0f *DESCRIPTION
75de0fe6613c0cb7267d4115dec0159f *LICENSE
2687c5ac701670453179dcf7c719aab2 *NAMESPACE
e27357e7f0fe869313e7e2c6ac2ec509 *R/RcppExports.R
1d386d432cc2cb4ef5d34c62c7d8e566 *R/data.R
75f0016abedc9508c8719b0ad2f8ba67 *R/helpers.R
2aa79dfb82b48356c5559874ca6837b4 *R/utils.R
93367874ee2fbce36b75f59760e92c4a *README.md
7b7612c3fb48dba007103e8d904a89b1 *build/vignette.rds
4ffaa2ee75baea64b9069037046f05f6 *data/Evers_CRISPRn_RT112.rda
606faf9f32351f73e2ab63545d51f9d7 *data/Sanson_CRISPRn_A375.rda
8b84e8386514cad52008a5d9bd554ba5 *data/datalist
7cda2d4ead7f8c0db8eb9802fb61eaea *inst/doc/cb2-input-handling.R
6be6c0ebcffdf8c8e50939cfee7f13ad *inst/doc/cb2-input-handling.Rmd
963390ca1bf92fe54ad534dc1a14179d *inst/doc/cb2-input-handling.html
dd84e8d1d5b7d539160bad62368de40c *inst/doc/cb2-tutorial.R
faca3a677c389200b11b17c2c4da9ea6 *inst/doc/cb2-tutorial.Rmd
6a28ca2d8ad50f017fea399b00b7f5a4 *inst/doc/cb2-tutorial.html
7caa3925001fcd5b96b0005003547eaf *inst/extdata/toydata/Base1.fastq
6cf0a8ac82eae578e9d51c162cafe613 *inst/extdata/toydata/Base2.fastq
1f18ec364a0e9cd12293a8cc61046188 *inst/extdata/toydata/High1.fastq
f38f7584d527b80fba902f050cf28588 *inst/extdata/toydata/High2.fastq
5bd8c3a850f938fc81165ecbaca4abb5 *inst/extdata/toydata/Low1.fastq
fc3b83b4506f3d7b1bb9f052902e94ec *inst/extdata/toydata/Low2.fastq
f8aaa00f9498b01e40d71e9d24fc2f23 *inst/extdata/toydata/gzipped/Base1.fastq.gz
a63e7bad54aa87a4d0fdedd8a21676a0 *inst/extdata/toydata/gzipped/Base2.fastq.gz
ae9720c2d7649392e2d51d96b6068695 *inst/extdata/toydata/gzipped/High1.fastq.gz
34f907dcffe6cbe75e1bc12c08cca293 *inst/extdata/toydata/gzipped/High2.fastq.gz
db9a1f953df9bda510fec8bad50d4f87 *inst/extdata/toydata/gzipped/Low1.fastq.gz
dc2e96e31aa51400381980f686b7f4dc *inst/extdata/toydata/gzipped/Low2.fastq.gz
26e2347380412f059eab3394a1b308e2 *inst/extdata/toydata/sg2gene.csv
ac57ee2d93bc9d8ff564c5dbbc3cef47 *inst/extdata/toydata/small_sample.fasta
4c0ef094001d93f4ad1e27efd69f048e *inst/extdata/toydata/small_sample_dup.fasta
943b4e41b32e3a38ee6505224700205a *man/Evers_CRISPRn_RT112.Rd
b2e59e0b02cc880149a9bfab856e04ff *man/Sanson_CRISPRn_A375.Rd
7c70e3848507b2e9facadcb244701739 *man/calc_mappability.Rd
4effad862ee930776564210caa832b64 *man/fit_ab.Rd
6043f53bf593e84fa5f8b79a4a0e9618 *man/get_CPM.Rd
11db3f97ec0f7dfdf68bd069aceaf6db *man/join_count_and_design.Rd
953a9f90751ed1df7e337d5735af0632 *man/measure_gene_stats.Rd
5c8b955e2346784ee859107acd79d018 *man/measure_sgrna_stats.Rd
0c4071e4abb8f23ca51d02b19f60a567 *man/plot_PCA.Rd
174fb81a4990dfdda14e44eb8ea7162a *man/plot_corr_heatmap.Rd
879e19551331542d9bd1c8d91bbde416 *man/plot_count_distribution.Rd
2c68546e05c76867ffcaa8788d052c79 *man/plot_dotplot.Rd
6818954ca110bc9d2cd5ba144e352e2f *man/quant.Rd
adfe7c33bb635ee1d187e76fd2f1ef4b *man/run_estimation.Rd
ac5f7168b803a2536e2e414e41841d66 *man/run_sgrna_quant.Rd
e994126b050778697011822cc7f4a74c *src/AdaptiveHash.h
611367b4daa002be93ab80c60decd026 *src/CB2.cpp
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars.win
3ec6c47ffeb701556f981c392b90aec8 *src/RcppExports.cpp
3c76a7a8babb4b4526c2bf87bc41ff88 *tests/testthat.R
6996d00fd6cb182afd6e1e3a04cdca81 *tests/testthat/test.toydata.R
5ca518a9f2d70ce0038e6e56cb1a863c *vignettes/cb2-count-matrix.R
6be6c0ebcffdf8c8e50939cfee7f13ad *vignettes/cb2-input-handling.Rmd
faca3a677c389200b11b17c2c4da9ea6 *vignettes/cb2-tutorial.Rmd
819461df2a1dbebcf89cd7348755aa8f *vignettes/references.bib
