b57ad180a1a88870de47310926086dcb *DESCRIPTION
35f4dd1e74cbb85850e1a9d252286060 *NAMESPACE
ef98bb9410a3aa8dc626929de7225688 *R/CancelProgress.R
ace2fca070519bd07145285f3b9adbd1 *R/FailProgress.R
a56504adfb4920ef3f1af4a15b9fd93a *R/OLDrunNLMEInitialRun.R
0a6bfc5538265ef9a589c4a895e3df77 *R/ReportProgress.R
d56a9e028d5e776425fa75aac062f29b *R/UpdateMDLfrom_dmptxt.R
b665d25dae01a9d3443d4efb8cc29ac3 *R/UpdateProgress.R
499f62d57274994b0d20f0c91680ee47 *R/UpdateProgressMessages.R
a4ffade2ca29c42154d20c2dc80f69c9 *R/cat_filesWarnLong.R
a5ce78997ba15d0818f10b1b035017d2 *R/checkHostParams.R
61ee806cdbde769863ab9c3ee5dd30ec *R/collateTables.R
74187cf68ef018a98381a44b3d89cee6 *R/collectJobErrors.R
09f044b35f836b79e886b6514f31e894 *R/collectJobResults.R
f39db55cf537013f2ef9bf1794957bdb *R/collectJobResultsGeneric.R
a6fb8e36ee38120e808205b3adb34f56 *R/concatenateInitEstimates.R
3d54325a189b47603c60d4e50897e078 *R/copy_InputFiles.R
e099f4a26fe13975f620f59ab3cb95b1 *R/copy_filesWarnLong.R
e49ef13cf4685505fa9dc194e7e031e9 *R/create_jobdirs.R
398c547f50fbf067cbf7af260a561862 *R/generateConvergenceFile.R
ca3f7c34e081adf90636981c11e52dd7 *R/generateEtaSpreadsheet.R
c578583551038825f90ed5f35ba9c391 *R/generateGenericTable.R
7877d8d0b70a11292c0dcbbd0d25460e *R/generateInitialScenarios.R
0121f8ccbabfb2f48b68830586ad6080 *R/generateJobResults.R
fe9425795b9bc3fb8bb3bc09483227c5 *R/generateNLMEScriptAndRun.R
13df165f90ee04a1e5a972ff1e29f1ce *R/generateNonparamSummary.R
b99d78d6a310a07b8b85870893f6f2f9 *R/generateOmegaEtas.R
f8bb6ea9412c4e7819e5fcb4810d2d72 *R/generateOverallSummary.R
b3b8f02fe5fc33a81ca9a4c2f6f1abea *R/generateResiduals.R
ec49eb2024d9ba0853b434d72aca5148 *R/generateSecondary.R
4ce756df6da365c1fedd68fa9e531373 *R/generateSelCovarSearchArgsLine.R
a2b72ea98bdba238838ddc2f6091fcf5 *R/generateStatusWindow.R
5130ffae92161d5c13ace9e03b3e35a9 *R/generateThetaCovCorFiles.R
6ec8a4972a18767d120f7a7ce0b9a128 *R/getBestResults.R
25d8db6e2797ca8b7ec4f1d28ba25ba0 *R/get_VIFs.R
bed7c81d4fdda12f30766ca2624e4fa5 *R/get_bluptable.R
70527e837e9d718027d6cb073d52b7c6 *R/globals.R
12d593fc848fb8f9bece77579c5c74b8 *R/moveStepwiseOutputFiles.R
6102af1f72f3789cef40ae019ec58c8c *R/multiCoreGeneric.R
72bc08423e757471a36c0a15102b24ec *R/parallel_utl.r
df4c74f03dbbf5824c8e5086c1d6fc88 *R/parse_outputFile.R
ad1ea43e4389e1990b009ce4dcc34dd4 *R/performBootstrap.R
c4956a5607b9aa53c37954beb4ea2f11 *R/performEstimationOnSortColumns.R
a847d5a9b3156123118ca8b522964785 *R/performParallelNLMERun.R
cf60c153aadef75ca3ecd1712319e5c1 *R/performProfileEstimation.R
34a8f59fc962aedd319d436c826b38ab *R/performShotgunCovarSearch.R
eb9a0ba5a388bedcd50dadee68182ac5 *R/performStepwiseCovarSearch.R
79f090f965a246aafadb07a76d36a784 *R/readEtaCovTxtFile.R
82a70453b86d38051a64a36ff1c3828d *R/readProgressDotTxt.R
e48c2801e29dc2fc1e4ff486cf2c32b9 *R/readProgressUpdate.R
77d87fb5aa960e44ead174c37c054e79 *R/readStrCovTxtFile.R
098f448e2674be2749d7f00a7484c72b *R/reconnectGenericGridJob.R
36873d5d5163bc360400af73c1addabc *R/reconnectToBootstrapNLMERun.R
782d24b3825f5885633397f4879b8563 *R/reconnectToGenericNLMERun.R
a43337a56b1d955d87bb61ad2f38945d *R/runNLMEGenericSample.R
604d9cd0af061a3828df833ba7213b20 *R/runNLMEInitialRun.R
f0a65d20a8242af3c84af8b4a7d32a5c *R/runNLMESample.R
a0e9b52f66d853b78cea2e5485c49bac *R/sortByColumnAndGenerateControlFile.R
f84afff5b0427dd6ffe2a8795afcf23a *R/startAndMonitorMulticoreJobs.R
6905e89c3cfb6106e7214640a816f392 *R/startGenericGridJob.R
3300bc3cfcf215a96b6f12a9c585c6be *R/summarizeBootstrap.R
462a673e2142fabe177744da808e4d68 *R/summarizeCovarSearch.R
f2de61bc9ed93d65facb67df8cce101c *R/summarizeProfileEstimation.R
e7e8c1516aca006a4520f4838bd916f4 *R/summarizeSimpleEstimation.R
ab6818062fa50aa647c8e4733180e767 *R/summarizeStepwiseCovarSearch.R
4a9e9957b4a6048acf4a743e5fee7d12 *R/updateInitialStatus.R
d1e3d418093670fd1be38b946b338a8d *R/writeOutGlobals.R
0040c7bf441014c8f6a466c758faa75a *R/write_function_to_file.R
471860a778ebe6f62e71848a8d9ac517 *README.md
48384fe93094912a2eb71d441a4f5350 *inst/extdata/performBootstrap/cols1.txt
4de52aa0d28b0ceced4835ce828cd75d *inst/extdata/performBootstrap/data1.txt
12621ef263676d1aaa6335fc2ff37b70 *inst/extdata/performBootstrap/jobArgsCombined.txt
d5833e976c5a174266b54bb7c89b7495 *inst/extdata/performBootstrap/jobControlFile.txt
566dd5357bd154d1a6769fcd4a004f16 *inst/extdata/performBootstrap/out.expected
d5d237c45ab6c7289c877be08f4bbeaa *inst/extdata/performBootstrap/test.mdl
a3c50f2a77b8a5015beae91198fc77de *inst/extdata/performEstimationOnSortColumns/Overall.expected
b9fd85e88578abbd80d506a5f1c2d8f0 *inst/extdata/performEstimationOnSortColumns/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performEstimationOnSortColumns/data1.txt
3873b6faa603d337a86d6686a4f6df44 *inst/extdata/performEstimationOnSortColumns/jobArgsCombined.txt
32cdc7c651de796442c88e29cb563c0f *inst/extdata/performEstimationOnSortColumns/jobControlFile.txt
9cb0dd0e2538dcdbac8fa72a16c0af62 *inst/extdata/performEstimationOnSortColumns/test.mdl
91b1b0c93386f38e88c6181757c7d900 *inst/extdata/performParallelNLMERun/Overall.expected
47771aac0560cad7832cff9d490696d0 *inst/extdata/performParallelNLMERun/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performParallelNLMERun/data1.txt
ec4ae3366f349f55a72ae674a2a4f357 *inst/extdata/performParallelNLMERun/jobArgsCombined.txt
72e1aa16fb95ff60b9aa7de6ee72d1ec *inst/extdata/performParallelNLMERun/jobControlFile.txt
ed2735e500c4783066f69f2477b7d825 *inst/extdata/performParallelNLMERun/multipleIds/EtaCov.expected
f5205a7890699b6b45336836765cd247 *inst/extdata/performParallelNLMERun/multipleIds/EtaCovariate.expected
c4b0cfd605f835cadb6ee8c26c50353a *inst/extdata/performParallelNLMERun/multipleIds/EtaCovariateCat.expected
d7598aa43a5bbddb6842b1934d4962e1 *inst/extdata/performParallelNLMERun/multipleIds/EtaEta.expected
4f14efb5f398529b27082e96e169a97e *inst/extdata/performParallelNLMERun/multipleIds/StrCovariate.expected
477cdceba488065ace0af342256145a8 *inst/extdata/performParallelNLMERun/multipleIds/StrCovariateCat.expected
01a84756c1a7004681fba5bf713ce16c *inst/extdata/performParallelNLMERun/multipleIds/cols1.txt
396fd2a5c75e7302fd7b5e668c0b9ac8 *inst/extdata/performParallelNLMERun/multipleIds/data1.txt
d5353af076e5cdf5940dc7f31d5dcfa5 *inst/extdata/performParallelNLMERun/multipleIds/jobArgsCombined.txt
b13f58781a0b7ad4ed0778d9157d688e *inst/extdata/performParallelNLMERun/multipleIds/jobControlFile.txt
7094838e6d0ee2d9c75366feacc544c5 *inst/extdata/performParallelNLMERun/multipleIds/nonParEtaResult.expected
4d3d8f2211a94f1e199fff40a907c98e *inst/extdata/performParallelNLMERun/multipleIds/test.mdl
a30c071906d388f09aefd4e2c1e9fc28 *inst/extdata/performParallelNLMERun/test.mdl
6046b31a49bc0ffc3499f48912efdf87 *inst/extdata/performProfileEstimation/Profile.expected
7c79f5d15446c3c79a53f5685b4a4fad *inst/extdata/performProfileEstimation/Profile.unix
7c79f5d15446c3c79a53f5685b4a4fad *inst/extdata/performProfileEstimation/Profile.windows
da63914d8923a5bd1e32f4bbca978891 *inst/extdata/performProfileEstimation/cols1.txt
a1c55f9ddc1ef91519248d9ccf4a0155 *inst/extdata/performProfileEstimation/data1.txt
b977ebb17e4d15d0c2810c193ab5cd33 *inst/extdata/performProfileEstimation/jobArgsCombined.txt
25b76fe4fdf69e8c9b780c4d07710e97 *inst/extdata/performProfileEstimation/jobControlFile.txt
6f46e43864a3a4fadf526362a264e90f *inst/extdata/performProfileEstimation/test.mdl
c0c13df8b50c17d5688679f3185d494a *inst/extdata/performShotgunCovarSearch/Overall.expected
471f10e16919ce37dbfa0ef6c38ac9a5 *inst/extdata/performShotgunCovarSearch/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performShotgunCovarSearch/data1.txt
e0ada1fdb9ab2cd1638225ffe77d9985 *inst/extdata/performShotgunCovarSearch/jobArgsCombined.txt
8f00dc40d5b3c5d9fcadebc15413ed3e *inst/extdata/performShotgunCovarSearch/newNlmeControlFile.txt
5b0a8c5d9a07f78dc7e17d22f86e1c3b *inst/extdata/performShotgunCovarSearch/newNlmeargsCombined.txt
1a77933417ac4b025c5f16926dd689e4 *inst/extdata/performShotgunCovarSearch/test.mdl
e0cbc8564f209db50e75aa752eae962d *inst/extdata/performStepwiseCovarSearch/Overall.expected
471f10e16919ce37dbfa0ef6c38ac9a5 *inst/extdata/performStepwiseCovarSearch/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performStepwiseCovarSearch/data1.txt
77568dd3e780616da0443c2c17ec0274 *inst/extdata/performStepwiseCovarSearch/jobArgsCombined.txt
d7315cdfdd5e261efbe0d38ded5219f6 *inst/extdata/performStepwiseCovarSearch/jobControlFile.txt
1a77933417ac4b025c5f16926dd689e4 *inst/extdata/performStepwiseCovarSearch/test.mdl
47771aac0560cad7832cff9d490696d0 *inst/extdata/performVPC/cols1.txt
794ba85168d772a4a9fc8ccaa5ab6053 *inst/extdata/performVPC/data1.txt
a1a08fb4780205e2009b05a811295014 *inst/extdata/performVPC/jobArgsCombined.txt
0fb614df39998538eb42353b82c8dd1f *inst/extdata/performVPC/jobControlFile.txt
8872920ede90433f9d07a17cc9a8cb15 *inst/extdata/performVPC/predout.expected
a30c071906d388f09aefd4e2c1e9fc28 *inst/extdata/performVPC/test.mdl
27ef31476dc8a91350372e11a17e3f7a *inst/extdata/simIntegrationErrors/cols1.txt
88efc7dd27428bd5ec1e796ffcb9c332 *inst/extdata/simIntegrationErrors/data1.txt
55203805d03e1609a6058812df5f0c25 *inst/extdata/simIntegrationErrors/jobArgsCombined.txt
240033e5941fb405e825c6767bd0c21c *inst/extdata/simIntegrationErrors/jobControlFile.txt
43b702abe9832a75dfdd7dfc7e24b968 *inst/extdata/simIntegrationErrors/test.mdl
0004fa90486076537cce1986ae9caf31 *man/checkGCC.Rd
4bf0d008cf1bafe5e99461376eb1c03f *man/checkInstallDir.Rd
f29e2f6d644a1fcf3f94b7b9af4f004a *man/checkLicenseFile.Rd
e52f1e18bd708312e98a8708ce6ef852 *man/checkMPISettings.Rd
c6c3040cb368b1101667166f53566c34 *man/checkRootDir.Rd
c9a37dfad558f05d6cae1477bf71cefd *man/getTableNames.Rd
ef640bb749002cffd513571a427a91bc *man/performBootstrap.Rd
d680e979bf9d67a43a6c2d255d32001b *man/performEstimationOnSortColumns.Rd
0fdff4edb032f0a92b8a957835f5b7d9 *man/performParallelNLMERun.Rd
97f7528d6a8e601ef5d92d8675a0927c *man/performProfileEstimation.Rd
aee28af2cf7aa8e241ef309e5a262e30 *man/performShotgunCovarSearch.Rd
aeedff04e1a1019d30c0f9024dbda18c *man/performStepwiseCovarSearch.Rd
cb3b1c35dc5839ffea8fd094ed5eb2c2 *man/reconnectToBootstrapNLMERun.Rd
66e5c249abfb5eb6ebdb6aaaf83e89be *tests/testthat.R
6c8368ccab46f6dce3dbc4b42bba1bdf *tests/testthat/test_VPC.r
1da5e2c56be45c7035b6d5214325ffca *tests/testthat/test_bootstrap.r
224561cc0bc9a3272e061985d0e91647 *tests/testthat/test_profile.r
bcd93028b38e3d2605d8075f9006b20d *tests/testthat/test_shotgun.r
d9accf5a1dbc56e0a539eec99f364644 *tests/testthat/test_simIntegrationErrors.r
82207310de21ac452ae18bb54a9f86cd *tests/testthat/test_simpleFit.r
6a92f28c75d3842b4c59ad9576fe667a *tests/testthat/test_simpleFitMultIds.R
8dd841ab38fa1d4c15470b37bf165851 *tests/testthat/test_sortFit.r
2da060d1269684a1b914f66ab3b1a6d4 *tests/testthat/test_stepwise.r
