0e10cb5b3d9093a74a449b3f09393814 *CHANGELOG
107c65549268594d80784ac14f7fafc9 *DESCRIPTION
9bef5253fb337f4cf339e553fc5e6c5c *NAMESPACE
5444079c00c4f1af58ca9702545abb12 *R/Claddis-package.R
cf597d560e3e43114a807633cfc737bb *R/align_matrix_block.R
b1148a8fc424e06985f7f5ee1026934b *R/assign_taxa_to_bins.R
7e8d2c2b120b923c6813a59c6e0b9790 *R/bin_changes.R
c609d96f3c0cdf881b942102007a3d6f *R/bin_character_completeness.R
98cdd98928700966ebe779aba6740e19 *R/bin_edge_lengths.R
61a34d1e0e42355588e3002a6cef8938 *R/build_cladistic_matrix.R
85e93bcf581f1ec20b40721f611aa08d *R/calculate_morphological_distances.R
0be1baf508835d365b6ed838ad1f6fb4 *R/compactify_matrix.R
7a58f8bcb456638f3a8bfd01fb1aeb42 *R/constructors.r
aa85fd2454761c0ccce2b97071a9d2d6 *R/date_nodes.R
77f6bf84c70cd2d3000138639627e588 *R/estimate_ancestral_states.R
4587b0c6e2665384d8e2cd621fcea3f4 *R/find_descendant_edges.R
b974394fd2a9bd54c63b4dfb002e5125 *R/find_linked_edges.R
2fc87d79b842d3bab87cd3f095902a84 *R/find_minimum_spanning_edges.R
ee2229d7abf12a11b68159b4b29cb42d *R/find_mrca.R
bacf9f100b1254f5c209b9d7f6871d4d *R/fix_root_time.R
9d95c5574e4a010c487aaf9bdaad9329 *R/map_dollo_changes.R
96a818a1190550bc4b221706170bc2ea *R/map_stochastic_changes.R
394202c3337514758808424f9cb3d4d7 *R/match_tree_edges.R
f6b0b2f08dcb5444f4807b6c85a4d107 *R/ordinate_cladistic_matrix.R
4e1a27f217d1cdc8ce86118201c4d4c1 *R/partition_time_bins.R
7b96c14861da37e80860130409f8a90b *R/plot_changes_on_tree.R
2d7e510c02a89914897ffccc5e2ab6ad *R/plot_chronophylomorphospace.R
4cd4af3840768e7725a0ff712cd17885 *R/plot_morphospace.R
38c202561e51b665af6f4b23534fdbec *R/plot_morphospace_stack.R
bff91991efa36a49d0bfdfa1fbd19acf *R/plot_multi_morphospace.R
2e2e937235738f69ce5560a7df3fedbd *R/plot_rates_character.R
25569bf26a83da36d6d07503d75fe928 *R/plot_rates_time.R
d832042ea0b6944d1a06fbc3ca39b515 *R/plot_rates_tree.R
4899f03737cf7be8caccdfd68faeed77 *R/print.cladisticMatrix.r
a084d99d44aabe93c31e152b018e26da *R/prune_cladistic_matrix.R
9e06150ee2d614d8d3d65fc34703c8c2 *R/read_nexus_matrix.R
76d5eceb60dfc0a2533fd2fab73bd9c2 *R/safe_taxonomic_reduction.R
ce9378133026d53486d705ab20d35261 *R/safe_taxonomic_reinsertion.R
78678057781bd565a1fb8a197ae3fc47 *R/test_rates.R
eeb17be4fe6852fec59487c39f5854c0 *R/trim_marginal_whitespace.r
e5703496f59bccab6633e81dee5b6155 *R/trim_matrix.R
05b940dc6f8158b85dce9da5d2f19dd4 *R/write_nexus_matrix.R
1a9c3e3ad1ff9b936b24aa985947273c *R/write_tnt_matrix.R
1c95886e586810b044e1ff3b35ab53e5 *README.md
3824f9bd3250dfbe55705cda8b3e0c37 *data/day_2016.RData
43175a3b95a3e59b425391c527254dff *data/gauthier_1986.RData
248e85f1208b94b14433d045ede6c5b9 *data/michaux_1989.RData
9e2c91b9a196082912e971160236db0d *inst/CITATION
52490f0761a237300c735e04d0931d9a *man/Claddis-package.Rd
ca4bc33be661b771d23343f0b715d9f4 *man/align_matrix_block.Rd
0468af03648af60c6f9821601291e44f *man/assign_taxa_to_bins.Rd
5051c886b48e7fcd7df5774ef9c8f126 *man/bin_changes.Rd
3efb111c2142a4763f9db08258820b98 *man/bin_character_completeness.Rd
551118aae17c6f6c44e95cfedeb54831 *man/bin_edge_lengths.Rd
c882adcd5debbbeba1dfd27db0177c35 *man/build_cladistic_matrix.Rd
c44620fbb6193648ff8a70f6973aa5bb *man/calculate_morphological_distances.Rd
5c5aa4bd95e1b0fb8b46817f46ccb437 *man/compactify_matrix.Rd
eecc0733c67133ddc7b59a1377b1e2aa *man/date_nodes.Rd
7f595aa802efefe2ba39a34e1f674997 *man/day_2016.Rd
c2dae507d7241876cc300b48aff14420 *man/estimate_ancestral_states.Rd
43099443a4da5b41fec8d266b7d549d7 *man/find_descendant_edges.Rd
932c6bde9f88911c87848f51b0bc0f02 *man/find_linked_edges.Rd
48564f4f17e32e2a1cb3e31ad6f3a2d0 *man/find_minimum_spanning_edges.Rd
d41c3433b9fe1938dcc44a26b9b33b04 *man/find_mrca.Rd
ff8d90b80ba4f7e70747ff41d4c307a0 *man/fix_root_time.Rd
b0cb25332a7fbcae42e5d0922066a743 *man/gauthier_1986.Rd
d3ef17553e0dc7c44631bd540c81ebb1 *man/map_dollo_changes.Rd
2a1048939a0fe6d091fc7a86b391ccb5 *man/map_stochastic_changes.Rd
2981ac7190bb63fa277b1aebc2b25616 *man/match_tree_edges.Rd
174715cb8023098292cae7ebce13a4d5 *man/michaux_1989.Rd
7104becfee34e7e944a3730d3bc90238 *man/ordinate_cladistic_matrix.Rd
f7fb82af1b41670dfc507b55a08d57d6 *man/partition_time_bins.Rd
c8aa71666cd6d0de925d5ee1b66c85fe *man/plot_changes_on_tree.Rd
974b9f1abb6410cc212b51e4cb3f465a *man/plot_chronophylomorphospace.Rd
4c4f32899c5dadbbb0ae8832992ae9ba *man/plot_morphospace.Rd
48b35f5c25b494b78223ecfe425c53b1 *man/plot_morphospace_stack.Rd
fe73463b826eb418aa159b75c522c17a *man/plot_multi_morphospace.Rd
9141795dbf3189b56df065ac87e62cd6 *man/plot_rates_character.Rd
fb032da251700c82e015ed1a01708c7a *man/plot_rates_time.Rd
6fc882b7c812e8110e05b0188ecec749 *man/plot_rates_tree.Rd
b90545718369cd79a5b6bf317b722960 *man/print.cladisticMatrix.Rd
1f6a468d97c6e0ac252d497e61cbcfe0 *man/prune_cladistic_matrix.Rd
2d391f9a500561b9f5f2bc9df77429b3 *man/read_nexus_matrix.Rd
85c86997c6cd962cabca683c41ea89dd *man/safe_taxonomic_reduction.Rd
740b61c2eca70d54625e8bc77b46512b *man/safe_taxonomic_reinsertion.Rd
5619ebce12347b97fe3e29174194e01a *man/test_rates.Rd
ba0a252a589decc2364640c409ea0ad2 *man/trim_marginal_whitespace.Rd
bb4de51cf45005d5a65007bb9d030385 *man/trim_matrix.Rd
306b6f7d80ea51781a4ace94118a12f0 *man/write_nexus_matrix.Rd
773eca857dcf028425cdeae7d0218f67 *man/write_tnt_matrix.Rd
91294429403b65525f515e7475825ce4 *tests/testthat/test_bin_changes.R
69d7a2ae902b8e44a9f5eabe2a034f02 *tests/testthat/test_find_linked_edges.R
2b79be20a8941077c1cc0af4840fcc89 *tests/testthat/test_find_mrca.R
