23efb83ac9abca4584a004e254fbcd3c *DESCRIPTION
2581cb543c548de8640808a139b364ae *NAMESPACE
2fcf0976d538786857b9a09981d0ad4d *NEWS.md
8426d9bfed586d465a8fbd70434b90fd *R/CodelistGenerator-package.R
8ba9cb23bffe2621a5965963ab621a7d *R/checks.R
a04301e99b7df726d2412cc0f60000fa *R/codesFromConceptSet.R
ba55076d9f3b6abc89f053b5b145962a *R/codesInUse.R
6ca33607703cf2018d437dec97995a58 *R/compareCodelists.R
fc0ad791f5fe736e6c1b404f1a2f9ba9 *R/drugCodes.R
fd87372148cb8659d4f5c03c425e75bd *R/findUnmappedCodes.R
4aec24e0d640edce28a10f83428da89b *R/getCandidateCodes.R
15f6862cf0669a23df3e73c93d9b9fcc *R/getICD10StandardCodes.R
8b5b1084a5b6a92197e55491b156de09 *R/getMappings.R
dde6e2b088236ab4f40f46ad8fe8cffe *R/inputValidation.R
b87eaa39e82ee0392ed0b5f68f3f129c *R/mockVocabRef.R
c5cc783373364bf314c2d39d54ac7445 *R/runSearch.R
ca4ac38ba6fd51e71bb1df698777be4a *R/summariseAchillesCodeUse.R
e019f13374db367cdd7151b04f33f2cc *R/summariseCodeUse.R
2281ec3952ad1fe9770962a5e2763899 *R/summariseOrphanCodes.R
8bbe1a8b85d194a6d6cfae7b7a24e69d *R/sysdata.rda
6a88d70fcffc0c4a9f584228235100c0 *R/tableAchillesCodeUse.R
7a0c9cd64b9fbba216b40a583c747c4a *R/tableCodeUse.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
0da9ae52d8176761ba5bbe34e36dbe0e *R/vocabUtilities.R
1cff85942124d5bcca8c0641c07aff99 *README.md
4df0fdf2fad909d377bfcee854b954db *build/vignette.rds
42b65802d597896b28b57a304820609c *inst/WORDLIST
3ca9cc5c01f646e385c3530e340c0903 *inst/cohorts/cohorts.json
d41d8cd98f00b204e9800998ecf8427e *inst/cohorts/extra_file.txt
820a94709409c3b4bd92fccfb055c944 *inst/cohorts2/GIBleed_male.json
7b66d8b088d973e3fc02396f6ef0ed09 *inst/cohorts2/cerebral_venous_sinus_thrombosis_01.json
d23d36c9c73e3b302e870efd856749b7 *inst/cohorts2/deep_vein_thrombosis_01.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock/oa_no_desc.json
a0783e75ba5be80391a3938d31c2338d *inst/cohorts_for_mock_dups/oa_desc.json
f86b08baf74ab3e00fe012be61e29314 *inst/cohorts_for_mock_dups/oa_no_desc.json
dffe4627e0a18749069471b9eae24936 *inst/cohorts_for_mock_with_exclude/oa_desc.json
3819d7fc0dd23dc6cfeea1608769e6ad *inst/cohorts_for_mock_with_mapped/oa_desc.json
4eed1d70d532d224af44c7c080ddf3e6 *inst/cohorts_for_mock_with_mapped/oa_no_desc.json
28e6093c2345696d3f91fea3e816dcb3 *inst/concepts/acetaminophen.json
d41d8cd98f00b204e9800998ecf8427e *inst/concepts/extra_file.txt
28bafd24684c6e9809c3942abc441d2d *inst/concepts/influenza.json
ffab0d7da54a6ba104894ffcaef29c4a *inst/concepts_dbms/oa_desc.json
c7c56ce5d3f054b25aca0cf3c735736c *inst/concepts_dbms/oa_no_desc.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock/oa_desc.json
01c7b29a2c5b0a1a69c15744ad219cc5 *inst/concepts_for_mock/oa_no_desc.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock_with_exclude/oa_desc.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded.json
800a730473dda4cb2e8f38499bb9cfaf *inst/concepts_for_mock_with_exclude/oa_with_excluded2.json
f8032cc2f3f6ac5882b3b9a8c59e28a8 *inst/concepts_for_mock_with_mapped/oa_desc.json
8f9fe3443c0fd13d189bece68077d4a5 *inst/concepts_for_mock_with_mapped/oa_with_mapped.json
516f95980a0978f8641e9d771f1c45af *inst/doc/a01_Introduction_to_CodelistGenerator.R
cba2dee4e26e352a6f14c57bfbc29c54 *inst/doc/a01_Introduction_to_CodelistGenerator.Rmd
840cebafcb616e4ea1dc2b2877ac6950 *inst/doc/a01_Introduction_to_CodelistGenerator.html
e7f76c69c99c3e1aa52be97896185269 *inst/doc/a02_Candidate_codes_OA.R
6677ef746a1d97606a3bb53356474268 *inst/doc/a02_Candidate_codes_OA.Rmd
4766ac28ed27aaca8a5a9c12bbc05914 *inst/doc/a02_Candidate_codes_OA.html
5e806a6ae585a539151fc9cf5580bb1f *inst/doc/a03_Options_for_CodelistGenerator.R
21df1f0a2ea5b0369d29c28f704a43fd *inst/doc/a03_Options_for_CodelistGenerator.Rmd
61775e03bae1361df3ae8ac619c456d5 *inst/doc/a03_Options_for_CodelistGenerator.html
88de987da99b830f0b5400b737d97daf *inst/doc/a04_Vocab_based_codelists.R
055c90334898c1120bd070cbd0d4e292 *inst/doc/a04_Vocab_based_codelists.Rmd
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0618707c728e7259350f88f4c9d53840 *inst/introData01.RData
3bf66c1e759d7a5201f8868a14e744b5 *inst/introData02.RData
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3f0aee4d7f3b1a680b664964f756687c *inst/medData01.RData
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3f0aee4d7f3b1a680b664964f756687c *inst/medData03.RData
35b4a2efa38e84d887ba1a0b82f664e7 *inst/medDataConceptClass.RData
84d8224e1c60d2e100ee4854e139646b *inst/medDataDoseForms.RData
28e6093c2345696d3f91fea3e816dcb3 *inst/not_all_concept_sets/acetaminophen.json
424674aa61b879dace87fb4533ab41b4 *inst/not_all_concept_sets/cohort_def.json
28bafd24684c6e9809c3942abc441d2d *inst/not_all_concept_sets/influenza.json
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData01.RData
013b6ee27df36385526261493562fe18 *inst/optionsData02.RData
024202eb74d4546fd7205db381ee6d0b *inst/optionsData03.RData
0e8ca73b3256cb3f894663e8a1889f7e *inst/optionsData04.RData
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData05.RData
12e975aaefe3bc5b88f6a50b4bed5d7a *inst/optionsData06.RData
72b11e006cf645579124d8dce0e72d2b *inst/optionsData07.RData
6ebe7f748540834eda64a3ff2f3572c7 *man/CodelistGenerator-package.Rd
6d3af2f0ec030d2bd47d0096c7ab0674 *man/achillesCodeUse.Rd
edfd325119444e8dca100ea45a2073f0 *man/codesFromCohort.Rd
7d44481c51c6adedd1f7ae77540f203f *man/codesFromConceptSet.Rd
ce6c04f481923609c889eb52cc81194c *man/codesInUse.Rd
03d6afc4ccfcdf4f0849891ef61d13fc *man/compareCodelists.Rd
1a03bf764f2802ae51d0140aa38848b1 *man/figures/hexsticker.png
767a068a9e7a44999b804778ecce7ef6 *man/findOrphanCodes.Rd
e2ff2692d821b9b562775852032c65a8 *man/getATCCodes.Rd
083983ec9a24bb62d5c0b6a46a853c7a *man/getCandidateCodes.Rd
93f1c7537894e630538e3adb1dcabf79 *man/getConceptClassId.Rd
1f7dd7b39f45da01ac9aa7511562dc1f *man/getDescendants.Rd
762b7a59d99244b5558f1295bdb4c421 *man/getDomains.Rd
e412b44229d4215408deab697aa534e1 *man/getDoseForm.Rd
684626a89abaa19e41bbebe56a48b805 *man/getDrugIngredientCodes.Rd
3358cc39fdeaaa9ab5ffa1ad96e145a3 *man/getICD10StandardCodes.Rd
bfe3903cc60acae3dce624681b4768a0 *man/getMappings.Rd
ff309b9c3bb6bebe5a98c31301dae86f *man/getRelationshipId.Rd
3dd4da8ab1e55f758ad8bebcae4b18f9 *man/getVocabVersion.Rd
68da7a3c237b805f69249c84a70add48 *man/getVocabularies.Rd
46e96aab2c7ea585555fa7da783b4b02 *man/mockVocabRef.Rd
29ee7383caa7fc8c14f52bd035509064 *man/pipe.Rd
eefcedd1e5f8d69869fef9c0fd87574e *man/restrictToCodesInUse.Rd
785883f844781123da22391844b34cb7 *man/sourceCodesInUse.Rd
ea594d85566fb78c2bb3554e7e5d483e *man/summariseAchillesCodeUse.Rd
070f9d623b4d97aed382cb65f3dff870 *man/summariseCodeUse.Rd
ab6b883662c71f6392fbb6e44454d5ad *man/summariseCohortCodeUse.Rd
f8db06c375880443c459ab9f7459f021 *man/summariseOrphanCodes.Rd
cf42b47a45e68aadabd6a7182e405678 *man/tableAchillesCodeUse.Rd
3ba7e5d51be03840aedaf656efe8398c *man/tableCodeUse.Rd
62d8f8ae4aa44ee7ca3b0520ac0fe134 *man/tableCohortCodeUse.Rd
43fba57714b85069326139a02acc5ff3 *man/tableOrphanCodes.Rd
54c6e8ade577cd9e23bcf07817edb66f *tests/testthat.R
08b4c4605edbf44e54ed37f9a892259f *tests/testthat/test-codesFrom.R
79591c710cefdd876eab8141c98f2e96 *tests/testthat/test-codesInUse.R
2fbe223de4608c996cc358409f317e67 *tests/testthat/test-compareCodelists.R
f809a95a05430c616c9f3f160eaa2927 *tests/testthat/test-dbms.R
49eb704b284ee6ad1456f12205deeacb *tests/testthat/test-drugCodes.R
4e95b6941595c85b2d4136f8b1bde81a *tests/testthat/test-findUnmappedCodes.R
03b58fb73f98d01ff33a809e8df962c9 *tests/testthat/test-getCandidateCodes.R
3643d79ae193198f4c1af9defb1480be *tests/testthat/test-getICD10StandardCodes.R
2d1c0ab4abd069475d11b857cde621f5 *tests/testthat/test-getMappings.R
bc37144b989559cf955337dbe4d7091b *tests/testthat/test-mockVocabRef.R
a74972767550c500184f790ba2201052 *tests/testthat/test-summariseAchillesCodeUse.R
b2c9be883f952b57b87ab85bbb9ce314 *tests/testthat/test-summariseCodeUse.R
cf9882bcdc2fc742d5a75c5a01a1f0b7 *tests/testthat/test-summariseOrphanCodes.R
94d0a7b62972fe2b944723da2289403b *tests/testthat/test-synthea_sql_server.R
45dc8527881871ee89570ecb0b4268b9 *tests/testthat/test-tableAchillesCodeUse.R
bfde06ba8e2053ce096a4715c11aeac7 *tests/testthat/test-tableCodeUse.R
0491617d43c7960d615bbc84a573a7bc *tests/testthat/test-tidyWords.R
6ae4f010b20157036cb6033d6c6a93ec *tests/testthat/test-vocabUtilities.R
cba2dee4e26e352a6f14c57bfbc29c54 *vignettes/a01_Introduction_to_CodelistGenerator.Rmd
6677ef746a1d97606a3bb53356474268 *vignettes/a02_Candidate_codes_OA.Rmd
21df1f0a2ea5b0369d29c28f704a43fd *vignettes/a03_Options_for_CodelistGenerator.Rmd
055c90334898c1120bd070cbd0d4e292 *vignettes/a04_Vocab_based_codelists.Rmd
6bf616c1cddc5cd28cf632c988077967 *vignettes/mock_db_fig1.png
159a4342c012e030a46555a265fcbe4c *vignettes/mock_db_fig2.png
42c52193ccb4b159463dfe41bb8a2162 *vignettes/mock_db_fig3.png
740a71ce9db94f8d2e1d74c847969261 *vignettes/mock_db_fig4.png
70204dc86851a04f9fa684188ee26ae7 *vignettes/mock_db_fig5.png
4579ee87c573b7aef313213e9d24ade6 *vignettes/mock_db_fig6.png
86499ed6855abc7c932922a6abfa8ccf *vignettes/mock_db_fig7.png
21ceed6a0107371e6783321a2ba2a0b8 *vignettes/mock_db_fig8.png
