183253898e1bd57bb4ac964df2000ee4 *DESCRIPTION
ef8a22d7d9dd046f7ad24f77693b49fe *LICENSE
429b4b3305fb43df38d5829403c633e0 *NAMESPACE
5e5f674863b87e6a9237b7c8fbb35104 *R/checks.R
5cfd3909f43a8458e72420bcf09bdf81 *R/data_documentations.R
5e36b6dbf76b7945dba832c4180cc31f *R/drug_targets.R
20daa48fe95538393860db5c268e61e3 *R/graph_combination.R
fda157c1195caa1161e902f69010f4d9 *R/interaction_score.R
f5e1fb79f9b4c757485db2ad30b3de20 *R/network_generation.R
520f65db470092d1d89011909c7c6737 *R/network_reduction.R
58e7dc0b28330b367bbcad93eff59321 *R/pipeline_functions.R
30f891f54ba69659ebf00f38d616d551 *R/settings.R
40923d51474cdf264b28e221e871c1de *R/utilities.R
e4e8f4adb1c091e4e82f4642346e5d5d *R/utils-pipe.R
2d1268d99920144aabd2e1a2738fc058 *build/vignette.rds
2f7507f39b29b946905c6d5bab7954f1 *data/combined_graphs_example.rda
fb60cf1647ddc0b9040ad72849b60100 *data/correlation_matrices_example.rda
a8233053d52d7f3e7a73b34d0caa4610 *data/differential_graph_example.rda
27b3dcfbba04fd55f43598c28f94de01 *data/drug_gene_interactions.rda
ddacf45ca4b9272932daeee77c85b6e9 *data/drug_response_scores_example.rda
623f0161c43608d5c936b500e29b458c *data/drug_target_edges_example.rda
a67e14cb2e1338bfab626d7467e80337 *data/individual_graphs_example.rda
ce88601500df549e0ae9232322ae6f98 *data/interaction_score_graphs_example.rda
128e9f05d5d2a9ecc170e2d42487b044 *data/layers_example.rda
ba901aacc653e5b2c62ef71ca69e1897 *data/metabolite_data.rda
ba4065afd5944c0ddaef272dcd77f27c *data/metabolite_protein_interactions.rda
40e15611a6385bdb1d071c04783a2500 *data/mrna_data.rda
1d38f822cc839d0f6038d970fb572001 *data/phosphosite_data.rda
9ae0e7b17784fda68792f61db122135f *data/protein_data.rda
7b3d9233b7bb6b01af2999b3dde70d19 *inst/doc/DrDimont_Vignette.R
4c2a4dc945de8b0c38ab873093ddf687 *inst/doc/DrDimont_Vignette.Rmd
a2a7335520c0ac2699327388e5024bef *inst/doc/DrDimont_Vignette.html
9e7829af6884507f92a20876e8c07f62 *inst/python_igraph_interaction_score.py
5c9078aca76cf41d379288e9e932d752 *inst/requirements_conda.txt
0fbba9dd571590e415779291f504e365 *inst/requirements_pip.txt
bff121f205077f80b9693d9b0d183d67 *man/calculate_interaction_score.Rd
e2cb5c415f27561df2352b50c12e03d3 *man/check_connection.Rd
ca8415c60302f8ea5dd75197a6d7c7e4 *man/check_drug_target.Rd
8ab6cf463e26bd5dc26f9f6014521bca *man/check_drug_targets_in_layers.Rd
f8fcc3ebd6540b4e5a81c65742af67b8 *man/check_input.Rd
408c3eb1ef241b96d6ec72834c2b43d5 *man/check_layer.Rd
2b803f23c526a954e9eaf7117f14297a *man/check_sensible_connections.Rd
91ff88e4ac27e2447ed82e1dfe7c8c72 *man/chunk.Rd
2cf9ab388c4ca5709eb35a53b4a1d2c9 *man/chunk_2gether.Rd
0e995c959c814ff95fb361c1661b7032 *man/combine_graphs.Rd
2b6e10920999248e8fb54b8f30a5973d *man/combined_graphs_example.Rd
e538abd2ef977eb8c7ff330498994679 *man/compute_correlation_matrices.Rd
af31035ac15c2601f5317550e34a5e99 *man/compute_drug_response_scores.Rd
3c70676d170fc68e1203732b0a39ba3d *man/corPvalueStudentParallel.Rd
892fe7a5d430f0eb9473c1712351a06a *man/correlation_matrices_example.Rd
975fbf86bdf700d372fe7ed13fc6726b *man/create_unique_layer_node_ids.Rd
33ddd87e2c23fd4c89919eff90ecac0e *man/determine_drug_targets.Rd
33985a243834e24f54360b5250473faf *man/differential_graph_example.Rd
02840e1ac478c1b7a037287d9b9114a7 *man/drdimont_settings.Rd
0a8381826c26fb85f996f08567260818 *man/drug_gene_interactions.Rd
297bfaa49d39dded50b308e55f960a0b *man/drug_response_scores_example.Rd
ec90614c5a5c81e5fb15702ee67db08a *man/drug_target_edges_example.Rd
87a918c1176860d35571d244fedc10b6 *man/find_targets.Rd
40c323eab53e453f42bdeaa7779f0a84 *man/generate_combined_graphs.Rd
ddf55b56177d14d13dd7c7657a7d863d *man/generate_differential_score_graph.Rd
f95ef154c6429ab01b2e72a7db63f0b7 *man/generate_individual_graphs.Rd
9f5da1c6f6c5c602fab841b345974b93 *man/generate_interaction_score_graphs.Rd
4c7af21c36895e79d7ee1e50975e2ef3 *man/generate_reduced_graph.Rd
0a1a1f7824931827578ab358d840a137 *man/get_layer.Rd
17f43534381eec1f9e23203bb1b72377 *man/get_layer_setting.Rd
d9285926d51260e2aeaafea2c12716c6 *man/graph_metrics.Rd
cf26f00524612077d7e171882455bd75 *man/individual_graphs_example.Rd
54ebba2bff772cc6a07a2613466ee3ed *man/install_python_dependencies.Rd
fe8a7ec606cc26d67c8bdfe382a95bf1 *man/inter_layer_edgelist_by_id.Rd
16d20eafdf93c25fb5d9d7567d6fdb8c *man/inter_layer_edgelist_by_table.Rd
a10944a5f744dd4ee432de61d6ca051d *man/interaction_score_graphs_example.Rd
21f49c5d7c8287b6ea184a50e0ff7bfa *man/layers_example.Rd
5ea885cf1b64e71c7f6731ba127e22e9 *man/load_interaction_score_output.Rd
c33b5412e14ce690d52935aba94e701e *man/make_connection.Rd
8d6f1872c50d60d38017c72331e53a37 *man/make_drug_target.Rd
d0e58c3e71d4761fe2d185fcf057e0a5 *man/make_layer.Rd
127ba155f46cca94f963f42d51ecf969 *man/metabolite_data.Rd
dee1a0d5e36c4b18b3797e90e6119472 *man/metabolite_protein_interactions.Rd
56a7e3fe4bb5123c19e33f0833a519f5 *man/mrna_data.Rd
43603dc0069b7ff5ed11287a71430728 *man/network_reduction_by_p_value.Rd
bc4d0912afa52547b860300c5e0cb9a8 *man/network_reduction_by_pickHardThreshold.Rd
c3b3d6e353683c592e09b896ce0bca33 *man/phosphosite_data.Rd
7aacdd9a85e285fd96f99a5bbd4c0371 *man/pipe.Rd
4f6732c20fe1d1ecc37870815966391c *man/protein_data.Rd
edde52fa617614e5b4a2b34dd0975756 *man/return_errors.Rd
5b4f55d18be2ad8115d46727b4f7c51c *man/run_pipeline.Rd
13172a18a79b3080d436e371bdfb7f71 *man/sample_size.Rd
a4530d8b75dad31e952dad866cf33de4 *man/set_cluster.Rd
65695862112d9e3507344ce78b60d88b *man/shutdown_cluster.Rd
64cad30789a30b02865ccad097cda94d *man/target_edge_list.Rd
fb015636b53a75bcf48e7479d76cd9f1 *man/write_interaction_score_input.Rd
4c2a4dc945de8b0c38ab873093ddf687 *vignettes/DrDimont_Vignette.Rmd
c9349276a94bdef80e637c72b719fece *vignettes/pipeline_bpmn.png
4eb15d4a4f3ecfb0d5826a01a8c5e6e8 *vignettes/pipeline_overview.png
