db5c7bb9867ef9ea1a1dcfc3e430b75c *DESCRIPTION
ef8a22d7d9dd046f7ad24f77693b49fe *LICENSE
429b4b3305fb43df38d5829403c633e0 *NAMESPACE
bb50cb2f0f2589c252a7823653dfeb58 *R/checks.R
5cfd3909f43a8458e72420bcf09bdf81 *R/data_documentations.R
18cf546fd039bca6e32e94ce75ba3700 *R/drug_targets.R
de0e1499bd15165ebfc8ab5b504649d8 *R/graph_combination.R
ffa7ec0512596804d03766b5a9863315 *R/interaction_score.R
5b54a39a928aa6ab7f4b8dbcfbfa20c3 *R/network_generation.R
af7941bfe2cf89f72b97b4584c68c70c *R/network_reduction.R
fb5fafff4e4d7706ed5e079338dc9ec3 *R/pipeline_functions.R
e7e2933cf4f970ded05403115a09ebff *R/settings.R
e06346b39f11d7a4e1d3ab8aa26e08a6 *R/utilities.R
e4e8f4adb1c091e4e82f4642346e5d5d *R/utils-pipe.R
a101b9dbd8cb7c1048c17db3339b25c3 *build/vignette.rds
c5943cc103719fc7ca3a0bfd46255d41 *data/combined_graphs_example.rda
7206e67b70173e78923f99ca3a363579 *data/correlation_matrices_example.rda
0ced0fff00a0151a70be09c1937f60f3 *data/differential_graph_example.rda
27b3dcfbba04fd55f43598c28f94de01 *data/drug_gene_interactions.rda
c8896c05d44cd893eaa836bb31ca7ad1 *data/drug_response_scores_example.rda
49ce317a00070e58fa0442a4728895ea *data/drug_target_edges_example.rda
a74fecfbe00fe9d9ea855c19ba547b15 *data/individual_graphs_example.rda
fbfc953557c2a50f9ac1a9cd84c1e1f6 *data/interaction_score_graphs_example.rda
f04acdb985ff7442b7effd310666b889 *data/layers_example.rda
7f29a8f0675cf493322549cc9372040a *data/metabolite_data.rda
9967eda700cf0f8aeb0bea5dcb46a119 *data/metabolite_protein_interactions.rda
40e15611a6385bdb1d071c04783a2500 *data/mrna_data.rda
1d38f822cc839d0f6038d970fb572001 *data/phosphosite_data.rda
9ae0e7b17784fda68792f61db122135f *data/protein_data.rda
971c657872217321a9abd33697b3315a *inst/CITATION
c6664068b455ec64096abfe8d50e5673 *inst/doc/DrDimont_Vignette.R
290661967e20a1b1bff0cf4fb035a0bb *inst/doc/DrDimont_Vignette.Rmd
5501e81159c66b1448c743866c005f6a *inst/doc/DrDimont_Vignette.html
9e7829af6884507f92a20876e8c07f62 *inst/python_igraph_interaction_score.py
5c9078aca76cf41d379288e9e932d752 *inst/requirements_conda.txt
30627f3d9cf88fae200a82423be2c916 *inst/requirements_pip.txt
d1ae2215871ea01f8bb6068be2e67381 *man/calculate_interaction_score.Rd
2e0958c38081e8dcbb26f0ea197c45d0 *man/check_connection.Rd
be83fafab9c608b06c72b8e77f49182a *man/check_drug_target.Rd
14fdef71e88d38cc5437a13797d4fedb *man/check_drug_targets_in_layers.Rd
450c27bc420086558f7a696f92edb00e *man/check_input.Rd
abcd6270d7fe2f4da6f06c8c3550d83b *man/check_layer.Rd
c8a3d5fb38c37b8b8489e678a4329945 *man/check_sensible_connections.Rd
2b228a957581f92cf5a00447135a3c3e *man/chunk.Rd
e00736e2ddd6fd19493b3100d5d311c6 *man/chunk_2gether.Rd
6dd1e506cf553557e7779e0c5fbd82f2 *man/combine_graphs.Rd
2b6e10920999248e8fb54b8f30a5973d *man/combined_graphs_example.Rd
b1b3446bec3284d7e5eea66c777297d5 *man/compute_correlation_matrices.Rd
92bb11d0bdde6026b921160d95879bda *man/compute_drug_response_scores.Rd
184ac9317610d81d474a368eb50dde6f *man/corPvalueStudentParallel.Rd
892fe7a5d430f0eb9473c1712351a06a *man/correlation_matrices_example.Rd
a3dff72c438a38b11976e1b4d66438d2 *man/create_unique_layer_node_ids.Rd
51cb1a2133e59a6574f4f107f2f4bea0 *man/determine_drug_targets.Rd
33985a243834e24f54360b5250473faf *man/differential_graph_example.Rd
ec9d010838a4bf47ce596cd6f2fc06d5 *man/drdimont_settings.Rd
0a8381826c26fb85f996f08567260818 *man/drug_gene_interactions.Rd
297bfaa49d39dded50b308e55f960a0b *man/drug_response_scores_example.Rd
ec90614c5a5c81e5fb15702ee67db08a *man/drug_target_edges_example.Rd
71730052d8b62c1dbf5890220efa8097 *man/find_targets.Rd
a56f5f644ebe4da7d85b434ac99bf589 *man/generate_combined_graphs.Rd
8e11a277238a18ac2cfa950664726cf2 *man/generate_differential_score_graph.Rd
6cced2b6c8b0c8a768a86d7ede12be96 *man/generate_individual_graphs.Rd
3b8a74f19936dfc357c6a5e6a8f44b9e *man/generate_interaction_score_graphs.Rd
2d6742fa7374bfb9bea2507009bc2a61 *man/generate_reduced_graph.Rd
deef30fce7ff8908bf506f4fdc2fd3fb *man/get_layer.Rd
80aad7658f6855ba39fe659cdf4a457e *man/get_layer_setting.Rd
33cbda173f97162a0217fdf800e2b0f5 *man/graph_metrics.Rd
cf26f00524612077d7e171882455bd75 *man/individual_graphs_example.Rd
9a9920bf4932dc4e0c92783f458f97b3 *man/install_python_dependencies.Rd
dad098afc283e50351ad3ffbcac89eb1 *man/inter_layer_edgelist_by_id.Rd
4945c7cd073634fdf930938c83a4cfa0 *man/inter_layer_edgelist_by_table.Rd
a10944a5f744dd4ee432de61d6ca051d *man/interaction_score_graphs_example.Rd
21f49c5d7c8287b6ea184a50e0ff7bfa *man/layers_example.Rd
3073f067ee262f689719a6454fb42ede *man/load_interaction_score_output.Rd
c10043d268116533f9b32ed3ec37ea92 *man/make_connection.Rd
97c5ee70025042f32f2a0dd030ee0557 *man/make_drug_target.Rd
d53ca6e9e12941c03ee4031490b9db3f *man/make_layer.Rd
127ba155f46cca94f963f42d51ecf969 *man/metabolite_data.Rd
dee1a0d5e36c4b18b3797e90e6119472 *man/metabolite_protein_interactions.Rd
56a7e3fe4bb5123c19e33f0833a519f5 *man/mrna_data.Rd
9196fdacb1dd691fbd9ec8f6d1c39915 *man/network_reduction_by_p_value.Rd
3cfcac8402dc8a88097654e352369c82 *man/network_reduction_by_pickHardThreshold.Rd
c3b3d6e353683c592e09b896ce0bca33 *man/phosphosite_data.Rd
7aacdd9a85e285fd96f99a5bbd4c0371 *man/pipe.Rd
4f6732c20fe1d1ecc37870815966391c *man/protein_data.Rd
44020869471cf3941a5c20d8ac80432e *man/return_errors.Rd
708f72cdf1d23a36d172f6b4c8368d86 *man/run_pipeline.Rd
68d10fea9e697a37ef01b7da1016c818 *man/sample_size.Rd
14cc8d57269a55e794e6c344fd126064 *man/set_cluster.Rd
c0f618d666d533bd72ae3b357e34f0f1 *man/shutdown_cluster.Rd
d6b42fd1f548ea945fa3079156c5c6df *man/target_edge_list.Rd
5a46e5d3dbed5373d96842f05242ac51 *man/write_interaction_score_input.Rd
386cc0bab0aa26363e7d068a2ad4adf1 *vignettes/220401_overview.png
290661967e20a1b1bff0cf4fb035a0bb *vignettes/DrDimont_Vignette.Rmd
