02a5896f01e84e793b8645aa56c9cd79 *DESCRIPTION
4a3cbd30b6dabec9933848f2fdf126b4 *NAMESPACE
f19ece6e5019f6cf964c9f51d6464f5c *NEWS.md
04dc45f9bed48c550fe87cc83dcb6a51 *R/GPAV.R
e9ca07c3c60051a4b93f7f2a6c1bd950 *R/HTD.R
563f1b2fd9a5be696b6528dd5df05d5b *R/TPR-DAG.R
1437e9f39350b7599a238a3d9f1b7e8f *R/annotation.utility.R
8b81eb7f1e9bb548fec634a2c8541a2d *R/graph.utility.R
1e55f7509a2fba9a94d6f765592a7afc *R/heuristic.methods.R
73954f5c6285db595f03020652fe8f42 *R/norm.fun.R
22312b1f9247bf7103971ad5490604a3 *R/perf.meas.R
8a5a239c71fc41a8acc27fdf865ecd06 *R/pkg.attach.R
f2a9eb26e646d6907ebc2b360ae8b58d *R/pkg.import.R
43328fa551e8065e4d3c5da2b6e55ec0 *data/graph.rda
29f9d7a6477e2472d64779231a2c867e *data/labels.rda
b38c67e9118b338a34a4f67284fed863 *data/scores.rda
8a1a6c2671b3af583bf39bc32c10698d *data/test.index.rda
a6784be6fba1850db1a693ecd6b44e17 *data/wadj.rda
231deecd6cdc3aaf9c031bcf8e8ee443 *inst/CITATION
0b3784247bd5b20bd16177f126da2386 *inst/HEMDAG_2.6.1.pdf
c37989d9385b1fff8267bd23b6606437 *inst/extdata/edges.txt.gz
f44bbfa43dd7fe005386a17edca4011c *inst/extdata/gene2pheno.txt.gz
5d5105e3f14e98178c3586e12283d442 *inst/extdata/graph.edges.txt.gz
ad0c193c6bbe1338e1d29174304dbdd7 *man/AUPRC.Rd
f57373ecc1cafe83eaa7b90cadff027b *man/AUROC.Rd
118ffc23d6837610aeb6bcad1f69945c *man/Do.GPAV.Rd
1ce1188e7853cf44434482eab6f9180e *man/Do.GPAV.holdout.Rd
cda44596a43d712fad89cb2b02ebf7d2 *man/Do.HTD.Rd
61b913798ec6693139750ad22350dd57 *man/Do.HTD.holdout.Rd
38f006ece98651fa35aca5b91daf6b7d *man/Do.flat.scores.normalization.Rd
324d475b3637d2a4370157be9300ac7d *man/Do.full.annotation.matrix.Rd
a54becf085a920f4adde40c1574fdf92 *man/Do.heuristic.methods.Rd
3d6bd2aeec61e6aef7c82f02b8189c41 *man/Do.heuristic.methods.holdout.Rd
f9b5f1c27dc6fdf576e5825e1a5a1032 *man/FMM.Rd
5be5c0687480267256a3ae2ee7111e9f *man/GPAV.Rd
18e425248185809415df81174ceed251 *man/GPAV.over.examples.Rd
26360b6bc1034821eb37d318b47e5c35 *man/GPAV.parallel.Rd
2051036b1527e42f722288e37ff27d1a *man/HEMDAG-package.Rd
9854dc1373ace50ac6a26ae8e6605fbe *man/HTD-DAG.Rd
5ba657da775481b5a3c1497296f18ae2 *man/Heuristic-Methods.Rd
d061c6f9afe736d92a7981e107831d3c *man/Multilabel.F.measure.Rd
51bdbaea8748dc7a29c21fe42637051b *man/PXR.Rd
b548537c90cae3e3510eab4ec8af1bb7 *man/TPR-DAG-cross-validation.Rd
358811c03e13a4f1cb8abb91110fcf5f *man/TPR-DAG-holdout.Rd
a5e8913ed6c2268a4905cda8d4127fb5 *man/TPR-DAG-variants.Rd
e25706f0a6e7f2ed95088cd0b1eb890e *man/adj.upper.tri.Rd
0e7790f6a259feb3ac1a65c8ae778437 *man/ancestors.Rd
a467906b57988b271113033f0a136f9f *man/build.consistent.graph.Rd
6b5f79f6c6e2df64e0fdb4aef2e55ae8 *man/check.DAG.integrity.Rd
c55263d8b962de5fe4e2a25491300755 *man/check.annotation.matrix.integrity.Rd
a626318f068eb19b87582e2cd5c7465b *man/children.Rd
a5412f2668dc16d523e5acd229604247 *man/compute.flipped.graph.Rd
97d1de66bb4335f26eee32e6638b29db *man/constraints.matrix.Rd
1fad5330ca7abe0c294a5661b740b16e *man/create.stratified.fold.df.Rd
a305cc5a2f8f702351467964e24022aa *man/descendants.Rd
39dfdf20058aa0aedd4507062c400562 *man/distances.from.leaves.Rd
d91e6dcb50a8e40d7741ceddc4c4a6c0 *man/do.edges.from.HPO.obo.Rd
16248ed16cacb7671b7589f65ed8587c *man/do.subgraph.Rd
68fa9e6815c6bcf4e43c924a14ac6a49 *man/do.submatrix.Rd
16f354daee640bccc6ce283f808e2ba8 *man/do.unstratified.cv.data.Rd
4eab3550b41c877ee419e8f3be246c80 *man/example.datasets.Rd
d5f7c81ecd1352d2360744c870a743d4 *man/find.best.f.Rd
0ab625fc22fbf7f4ccf4b47706005dec *man/find.leaves.Rd
7a7a24ee61ebbc510300b1734221fe66 *man/full.annotation.matrix.Rd
3ce951ecb5b48692d9b0a6face3579a1 *man/graph.levels.Rd
d4ea7e493430fc3abca18aba76584196 *man/hierarchical.checkers.Rd
7246f45c3b5d7daca4edfee491d918cf *man/lexicographical.topological.sort.Rd
ede763fbe6e64bf7728942eccc560d0f *man/normalize.max.Rd
1643bf2f998ec9ba2a5f42bec322d742 *man/parents.Rd
445a631aba09978045e73c6bb6271419 *man/read.graph.Rd
37a1ab4664863f513237f84c9a72d597 *man/read.undirected.graph.Rd
c46ee24a7b43a97ce8749812cc8f789a *man/root.node.Rd
ddb4d626122b6e430553b8e77cb24e79 *man/scores.normalization.Rd
ced4e33517972000df04b04a19d4682e *man/specific.annotation.list.Rd
0a327de1e7e07faf36741f9d926dfb1a *man/specific.annotation.matrix.Rd
79af0935098553de33722b90889856c1 *man/stratified.cross.validation.Rd
ef499538c982fe5a60be10f12b257134 *man/transitive.closure.annotations.Rd
c47b9c02953fed40d8207df0771a946e *man/tupla.matrix.Rd
643df281d16cd945bcc396681d9d3a69 *man/weighted.adjacency.matrix.Rd
19f0bb35152436481d2df6e9d629a662 *man/write.graph.Rd
d5968e759166c7c97ffd510e47e1d79b *src/GPAV.cpp
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
a02ba382db6b024cb986998db299dd7a *src/registerDynamicSymbol.c
