650b5ff0d158f374f2d74ca34cf213d5 *DESCRIPTION
90aedca12ed87b241fb294d3d18b15dd *NAMESPACE
d40bfb6f6aa328c8a65d6848f2bc6dae *NEWS.md
49e5c3bac134ae2126c43af5a250697d *R/annotation.utility.R
209944b7e883dbd9142918601f9dba72 *R/gpav.R
9cf2ddd9be5ed3a246f2ce5f0b1fa084 *R/graph.utility.R
09fc8b695c7ca5fe5e79a0533e1b1bd2 *R/htd.dag.R
cda998bb41dcca9aaac6ea45c7706446 *R/norm.fun.R
8d906ba749a4e55564b7c7bffdbc4f54 *R/obozinski.methods.R
9a009a7fd855f4f56a7b9faad8d51902 *R/perf.meas.R
a040ecfb9fcb9ae66b98e1b3961d7a36 *R/pkg.attach.R
e737957db40e9d28794cb391c1b0f924 *R/pkg.import.R
a33de72b8bfb2438c26fea414fb8c0f0 *R/tpr.dag.R
43328fa551e8065e4d3c5da2b6e55ec0 *data/graph.rda
29f9d7a6477e2472d64779231a2c867e *data/labels.rda
b38c67e9118b338a34a4f67284fed863 *data/scores.rda
8a1a6c2671b3af583bf39bc32c10698d *data/test.index.rda
a6784be6fba1850db1a693ecd6b44e17 *data/wadj.rda
231deecd6cdc3aaf9c031bcf8e8ee443 *inst/CITATION
be681e9fb9ffbffe2d7762780d468274 *inst/HEMDAG_2.7.3.pdf
e46f9aeba1211d23ae08379e028a8456 *inst/extdata/edges.txt.gz
f44bbfa43dd7fe005386a17edca4011c *inst/extdata/gene2pheno.txt.gz
5d5105e3f14e98178c3586e12283d442 *inst/extdata/graph.edges.txt.gz
ae5c730c9a4b79556d70f65e0ba25223 *inst/extdata/scores.list.txt.gz
051a2dbc7af149382cb34ad8ae556543 *inst/extdata/scores.tupla.txt.gz
d267daca420001d49260d7856c143692 *man/HEMDAG-package.Rd
25b7cfb3349549ef518223b17ab72441 *man/adj.upper.tri.Rd
e3e05891411a290d394dda35d1351680 *man/auprc.Rd
861f82dc4dd9e90306125095e7abfb9a *man/auroc.Rd
afea1bbdd4758dff24480aa30d162299 *man/build.ancestors.Rd
62eb9665081c09d6e9476e13ab83e956 *man/build.children.Rd
208a5963b4f91ed23f7cb154cab74af4 *man/build.consistent.graph.Rd
d022fb8bd7dfe1ea6970de04f4263d5f *man/build.descendants.Rd
d0a40df16f2f1dab95148fcad354aa7f *man/build.edges.from.hpo.obo.Rd
b74e50ca0513c9845270733b9725b8ba *man/build.parents.Rd
e09fc2a5dc47580af82affde46f526b5 *man/build.scores.matrix.Rd
50de40017861a3586ee05a243772b27d *man/build.subgraph.Rd
a4f47dcf1cf13569f38a19647cc8571c *man/build.submatrix.Rd
6276c08ee3663e2e138842a8d285ce1c *man/check.annotation.matrix.integrity.Rd
43c43944e9ceb579161f4f076b60cb93 *man/check.dag.integrity.Rd
2db8534b4a885bfcc249fb565c7ba1b9 *man/compute.flipped.graph.Rd
ab40aed6bd8b8f07da0268c9ba04c5e8 *man/constraints.matrix.Rd
52ab5fdc2ce47982b3cc4a47d0ebfce1 *man/create.stratified.fold.df.Rd
e136c51cf2492ef7360cf24b2a3e9c11 *man/distances.from.leaves.Rd
a5c64b29b3b9f10065c3fe7cd9778e47 *man/example.datasets.Rd
df38ce95bac52b463427a33828cb3097 *man/find.best.f.Rd
c390e165f547e61af4c19a747e7878b6 *man/find.leaves.Rd
5a84caa5fdb122a1877b67a5f46e310e *man/fmax.Rd
2579fa791350f37705c108dbe6da3e48 *man/full.annotation.matrix.Rd
406d9c71132a286f4c8cd4fc3f60e188 *man/gpav.Rd
f5d0dbbc57e098104e6dccec1305ba9f *man/gpav.holdout.Rd
d344b427b209ba890029a597f8bd3c7b *man/gpav.over.examples.Rd
3ea2736901328c6d7fbd6b0016fddb50 *man/gpav.parallel.Rd
8c8a950fc9e030b47cbd9ed01cba79be *man/gpav.vanilla.Rd
1cc3019d214b28dd17f16d25c2170eae *man/graph.levels.Rd
d978dca14c08c11617a39e8af2c41784 *man/hierarchical.checkers.Rd
887e1687ba6489dd6c13abb05227d6ff *man/htd.Rd
068e9f8c4962d5b9408641b2880840fb *man/htd.holdout.Rd
d8cbdea3d512b0518338582b1bb4dd3d *man/htd.vanilla.Rd
e9af539cf4af535493e79030cc219276 *man/lexicographical.topological.sort.Rd
317efa89e672def7885d0d5210a21387 *man/multilabel.F.measure.Rd
b288d33083fccc31ef658228234473c4 *man/normalize.max.Rd
3fd3e8c32db27e73d471cf47ceae957b *man/obozinski.heuristic.methods.Rd
69bd0f82541d5781f9e2652feac17e94 *man/obozinski.holdout.Rd
4a5460b136bd84a574781a9bc42ed41f *man/obozinski.methods.Rd
a379a2827c3fbfe740e0df5e18c1b0a6 *man/pxr.Rd
9e49bb988868eb5305cec28d120d63f1 *man/read.graph.Rd
b1cc20bbe24c2fc62c3c8ddc9e6f99b8 *man/read.undirected.graph.Rd
e33fee20c3b4cc426252a8a0ee7b0196 *man/root.node.Rd
7ee9ffe8c17ef98feace069ee7659f88 *man/scores.normalization.Rd
a44b68d5f0a1de4789edafbca0c3edce *man/specific.annotation.list.Rd
8f4e593363a08c49770b22c7105b9d17 *man/specific.annotation.matrix.Rd
a6d7271f9eabcf7d93100a6ed7f345c5 *man/stratified.cross.validation.Rd
81170231c72c8bfb11ea3b1a3942de7b *man/tpr.dag.Rd
4786d2a9ac6d14c91b6725ecbda5b4ee *man/tpr.dag.cv.Rd
99dd063df134658379cc51b09917962d *man/tpr.dag.holdout.Rd
ba9b4b6691bb50bb58fa22c8fe4427dd *man/transitive.closure.annotations.Rd
9296b9710965620cf534c04393ebf143 *man/tupla.matrix.Rd
9976d21b05f9f05c76ae101f06604120 *man/unstratified.cv.data.Rd
c41c626caf31f262b1220e6af1eb079e *man/weighted.adjacency.matrix.Rd
401c06e6cedb45a8741ab478412a3d0d *man/write.graph.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
de51e9153abbfc51501fbfc1fc4c5665 *src/gpav.cpp
a02ba382db6b024cb986998db299dd7a *src/registerDynamicSymbol.c
3c1971d21673f98101acc107b41e77e5 *tests/testthat.R
18d363059db7f71e52bbcadbd589beeb *tests/testthat/make.test.data.R
501190e0f827f29975af8fb721b94198 *tests/testthat/test.annotation.utility.R
515410ea81cbd8af9d73d38f47dea20a *tests/testthat/test.gpav.R
5cd755ae9b5d65ebf0309f410a28c79b *tests/testthat/test.graph.utility.R
b45d5beefd28431ff992f1e724e79d03 *tests/testthat/test.htd.dag.R
298a40cf464acfdfde298248d3b6c366 *tests/testthat/test.obozinski.methods.R
97594e0ec999551e34c749eacd553cb3 *tests/testthat/test.perf.meas.R
c64d1fbe9a554bc68395b5be78903cf1 *tests/testthat/test.tpr.dag.R
