437f746eacb70c9738a58d352a9918f4 *DESCRIPTION
3e5286b993d9d7f9fbafa956125e197e *NAMESPACE
7d4bcf73273e8dd1bff8bd41d061fb80 *NEWS
616574e24ea1853b6308167e72228c8d *R/buildTree.R
644baa373daa0172b5c770d4e85c31b1 *R/checkTreeValidHelp.R
5764b787685e304d0bc26c02ca709152 *R/checkTreeValidity.R
7e0f028581d37548131f82770fbeb9fb *R/compareTwoDataSets.R
0bb8db5580d36d7e1169a17791e6123a *R/createAndPlot.R
da60baab9fc761ae548df84eb16bd888 *R/createTrees.R
e2c749e7231639e69f6bb3cf28aa5971 *R/displayLegend.R
42a2cf47aadb445e46f6248cadfc0a5f *R/formatData.R
150fbe8b3408b0ec3e811d7dd70bc3dc *R/generateTree.R
8796087a6c8d118aa3a0bf83ffe06f3d *R/getBranchSizes.R
3abd86e58af15b43ae1ba1653a4c2a3f *R/getMLEandLoglike.R
045bd458dcbbdf8be2c512492f5e3b70 *R/getTaxaDepth.R
b1d32ae9decc663234aa4bd596b3f19e *R/mergeDataSets.R
1fc4fe8514f5ff2f2f56817147d133fa *R/pairedCompareTwoDataSets.R
ad6754411ecab51f3b1a5d28b576c0e0 *R/plotTree.R
22edfdde1f4cbc3f1e41dacf336cfbdf *R/plotTreeDataMDS.R
0eddc8d3f73e42abf8b9361438989a15 *R/removeUnclass.R
c33faff577182b0fc1ef4721f501419c *R/subsetData.R
c17013c22b6e5e44150259e3cd33e44a *R/transformHMPTreetoHMP.R
19be22c42fcef46a13967fc9f3da4acc *R/transformHMPtoHMPTree.R
d0cf83e0a5d9f0994534e993f5629a80 *R/traverseTree.R
020ba5fc194e8ce7220d96a807baa3ed *R/traverseTreeHelp.R
9033fc5a0507da9756089623eea13945 *R/trimToTaxaLevel.R
845257a2fe7d2b1172edd754aed50394 *build/vignette.rds
ef13844a781c473edc105ef6ad0e2610 *data/saliva.rda
9871933a151c3f5e5e55bb4a304122db *data/stool.rda
184f18fbed9c23cfb548c569f2f3d2e5 *data/throat.rda
746c2fae89c0f882b4f5f87ecfb6676a *inst/doc/Creating-Data-From-RDP-Tutorial.Rnw
3a19304788d1d49e5c81f8b859e8d45d *inst/doc/Creating-Data-From-RDP-Tutorial.pdf
0b782fd104371a166faea9240cfd498d *man/HMPTrees-internal.Rd
fc0f28a9717f449604d0b70c04018971 *man/HMPTrees-package.Rd
51b9b6396021d7f93f7d05c3773d1ce0 *man/checkTreeValidity.Rd
60d4909bdb54dddfab029797750749e0 *man/compareTwoDataSets.Rd
00f86edf2d4aa8906caf1e9e37ca8e6f *man/createAndPlot.Rd
28cb76f2c51cf66cf7bcf98c67d8a02b *man/createTrees.Rd
d484fb228cc3631d76be1a16eec58d5d *man/displayLegend.Rd
1500d1e275729c1c296e1c6f5eb73a03 *man/formatData.Rd
7934edf9646512f5c041d7f5c1803508 *man/generateTree.Rd
301807f824d5c68106962d2fa4ece519 *man/getMLEandLoglike.Rd
a662fe1fb17b3a87703f4bf329916130 *man/mergeDataSets.Rd
83cbbe0e587c61b62f1a489521a1744f *man/pairedCompareTwoDataSets.Rd
00c89f4a355e31f0f52e8797ce9999a1 *man/plotTree.Rd
290415cc3559ad15e2b4d6f49a40f610 *man/plotTreeDataMDS.Rd
c1bb45ae4ae342835905ae40b2e844ab *man/saliva.Rd
74a2228b7c01ada22ed4ffb4dcbd09dd *man/stool.Rd
6789fdbf997ca2bf6e93e4fd32482607 *man/throat.Rd
b96ef74b26875c8c8f7552c67152b6f4 *man/transformHMPTreetoHMP.Rd
367fe0129150576b0d097c5766b5c8e2 *man/transformHMPtoHMPTree.Rd
fed99667b1e3c58df98dfbf37de5aaca *man/trimToTaxaLevel.Rd
746c2fae89c0f882b4f5f87ecfb6676a *vignettes/Creating-Data-From-RDP-Tutorial.Rnw
