CHANGES IN HMPTrees VERSION 1.3

CHANGES

* Added a function to compare paired data sets



CHANGES IN HMPTrees VERSION 1.2

CHANGES

* Changed every function to expect the taxa to be listed as the rownames, rather than the first column

* Changed the parallel computing in the compareTwoDataSets functions to work on any OS and use the doParallel package

* Changed the plotTreeDataMDS and mergeDataSets functions to accommodate any number of data sets

* Added more functionality/options to the plotTreeDataMDS function

* Changed the generateTree function 

* Changed several functions to allow the use of splits besides a '.' in the taxa names


