7159008443af4c2092d2a81ae557a353 *DESCRIPTION
07ad01efa24d080a0af5c89a62cc40b2 *NAMESPACE
efc1782944c988cbbdfc2f4f31ebb546 *R/JAGSmodel.R
5002b3347b247e4af9292f33085584aa *R/MCMCfit.R
e04230a58aadd6782ad0f497d4b3ae51 *R/ModelMats.R
5ea174001e93ae92e091ecd827fd0459 *R/NextVisit.R
464aab3612bc81ad695709c9b840b0b6 *R/RcppExports.R
7c49d7063844031498b4a8d8041c49eb *R/S.b.R
ef46d2a49f3e4343d0c96652e0bb3487 *R/STANmodels.R
84e19a9756a29e0a8cf6fdf9a399cfd5 *R/adjustKRW.R
63643be488a1cd6a20d812ce548d1bf0 *R/adjustScaleRW.R
99feeb9770860d2b531700175d197114 *R/anova.JMbayes.R
bc1f5fe5cc75ed660c2890a4a118d058 *R/aucJM.JMbayes.R
e119c8ce46cd7beb710c4d6248451217 *R/aucJM.R
aa9934e6ce0a511ab1f962b8f0ab72dd *R/aucJM.coxph.R
bef387fdac2eb65f9210bd3230f4b654 *R/aucJM.mvJMbayes.R
874f62973f980ddbf415a1ea5d507143 *R/bdiag.R
ea180136f7b2912861cab81b5430e908 *R/blockUpdate.R
9d984103fb45aa7545eb56a4ed041b95 *R/bma.combine.R
d228a24a53b099604af6615a8a73bb30 *R/cd.R
a40e956112c051b80b628dec65be2616 *R/cd.vec.R
6335db23f53aa6c53401916f60821b15 *R/check_td.R
2e4520f8a51aa2a52049b4962b185ed3 *R/chol.transf.R
38eea0b75cbe1497cd63c4a2ea2db216 *R/coef.JMbayes.R
b9e3804436e22aaafad3ab3647eea3c4 *R/coef.summary.JMbayes.R
45d69a8857077ed1648116f80cc2920d *R/computeP.R
62fbe549336483c1e7ba21017cad2ffd *R/confint.JMbayes.R
f6d405ceb458b3a879ae803ed03fb37d *R/crLong.R
4a934205ad70a51f7c91ffb91982873e *R/cvDCL.R
7ddc2a22b85995eb119d11b3d4b6b4af *R/dataLM.R
51a43fa818a1a32143931f3de9106477 *R/dbs.R
6677717c581c28c555e4a09501a9e6ed *R/dgbeta.R
1608f7aa611c29744e085a67d2a0c7ab *R/dgt.R
8cad36bb5cf6dae1402b706f8f4af403 *R/dmvnorm.R
9e644f5f870baf8fdc31ca47c79d11c8 *R/dmvt.R
cec7432cd15ef024030fad7a2124e9b9 *R/dns.R
a82aa4c0ad372ab69f7bd56ce0a0430f *R/draw.stick.R
d4ba202311aafa2dd131e4f04e639fb9 *R/dropAttr.R
ff6e0f59cc3db33109c7455fdcd03c80 *R/dwish.R
677b3e5814e71695f5fff03ae7002e71 *R/dynCJM.JMbayes.R
98df0886b9a81ca886e06cad7f3e6025 *R/dynCJM.R
dde50198b28372773f1f28440d196308 *R/dynCJM.coxph.R
6d47d9e6f66d11a4f75079f4e453d691 *R/dynInfo.R
9058fdf4d4e0d1fca559a957f032e4a5 *R/dynPred_lme.R
bfbebc19b6527096b1f1a04c61047e73 *R/effectiveSize.R
9258d860454312c320d67af297f71657 *R/extractFrames.R
58a85fe423154662a22c6f8a727f2fcd *R/extractInits.R
0fe2013965eff194bd5b729f3eb6a2aa *R/extractPriors.R
20827b372b406cc5a5087da68023a409 *R/fastSumID.R
9eaf81b92b219ebfb39a0c06da95aa7d *R/fastSumID2.R
3edef8a796c82193e8e67718d59fd63e *R/fd.R
63bad5bce30a4aac3a14f04de865dc2c *R/fd.vec.R
4718d5b83cc3f0fa518fcf85bebbfeb6 *R/find_positions.R
8d7307cd92e00c2d1cb3ead83444b680 *R/fitted.JMbayes.R
7371154b28264adbcd1d599c0de8e97f *R/fixNames.R
350c2878fe19b0165432eced7d4eb0ca *R/fixef.JMbayes.R
b29b5d2f81f4e838c75f65d25c7ef5c2 *R/format.perc.R
6d05a41db4b09b30408784ae9b2f0acf *R/format.pval2.R
3c504626a0afc08c4c318dab66dc3ffc *R/gaussKronrod.R
7ed81e7c79911640198c28b33a1e615f *R/gaussLegendre.R
720dd74817b59a10248b1338d64e2810 *R/globals.R
f38b5dfb5e77b827a029a55f2d4da67c *R/hMats.R
3b414afd7570b6e7fcb5c6f3090cfb41 *R/hessian.JMbayes.R
4d1da468db170bc34726d1c4b3d0fae6 *R/ibs.R
a2a3e6dd608958613a53b62731d343b7 *R/initSurv_mvJointModelBayes.R
7c522fd3967e06bfc46cd22706c42958 *R/initSurvival.R
76e02e453fdb155dc480c35d76dd3c5f *R/ins.R
c6e9502ea83bebea299fb50cbffb6fb3 *R/jointModelBayes.R
8c43544fbf59c99e943a413aef73dcfc *R/log.posterior.b.R
5411ddf0ce93132c35a07437a8b603db *R/logLik.JMbayes.R
99f503d022028f5298b2326d1aad6f83 *R/logh.b.R
0e9dba68386b7b23e35828fedb66a542 *R/makepredictcall.dbs.R
c1eb3f0bbb898e5a0b115b920981fca6 *R/makepredictcall.dns.R
c2ff4b5f46ee601dfe59a06ef4c53a65 *R/makepredictcall.ibs.R
be10618a0627ee5062d4819d29824e60 *R/makepredictcall.ins.R
d0497d5497752d1bc2299dacadc530f1 *R/margLogLik2.R
a959aae1e71e78ab793338cc01b3b0ec *R/marglogLik.R
d679294a3fcfa8398310d5fea5cda480 *R/methods_mvJointModelBayes.R
e57959dcad15a71359a206ef15a5e0a5 *R/modes.R
2266729bbadc22fa62468b72381be798 *R/mvJointModelBayes.R
ec886d1fe6920ea1cfff89c7a27a7e31 *R/mv_glmer.R
83f04fb3bf7167b74a4e9ad659276449 *R/nearPD.R
e125acce83667f37cff5ab6f3a496251 *R/pgt.R
d83e0fc85fd19d0a2c534b3b2581526c *R/plot.JMbayes.R
2c0f396d53fc9ad3c2f1b3e744cb0ebb *R/plot.rocJM.R
db57df4ec605599548e477864fab9869 *R/plot.survfit.JMbayes.R
048efea9e9af2acd548eed687bfc95c9 *R/prederrJM.JMbayes.R
7dfb47273da4f597e351dded97f83db4 *R/prederrJM.R
0a14954816bf007a0561fbf65324aa42 *R/prederrJM.coxph.R
0352acdec4e8cfa3eb5b950e93e3b381 *R/prederrJM.mvJMbayes.R
48b2f2bc351b02360ffe06a28e4237a7 *R/predict.JMbayes.R
375d882dbcaed10bb6f9d363841cdb89 *R/print.JMbayes.R
bc5be9e39bfb23df912279f656008926 *R/print.aucJM.R
ec79261cd95e7160df1af7e153b0abf3 *R/print.dynCJM.R
d42f469cae609f357664916b7b5d52b5 *R/print.prederrJM.R
061d43af19c7032a92f76b195a2f7d88 *R/print.rocJM.R
e57899d800c77abf41e5950be6223099 *R/print.summary.JMbayes.R
0879c19ab5d261ab47f73c0f2259c5dc *R/print.survfit.JMbayes.R
f55761582d42f27595389cb6bdb6f772 *R/printCall.R
695b8cad7f75689f451198b2f79e783f *R/qgt.R
5a2899f7fbdec456826cda9efd41339a *R/ranef.JMbayes.R
a19f754b0f68d1aefd8662ae4d49986b *R/residuals.JMbayes.R
8f79df33a857384c9d1e41bc63605685 *R/rgt.R
55581f1e8d484d53e7002510ff5d857e *R/rmvnorm.R
caac54f5106e403eee10bd23a31a2751 *R/rmvt.R
3a97b14d4df340edd670ad3799fe1849 *R/rocJM.JMbayes.R
3f23f3e20469454e189f593a6eab50e0 *R/rocJM.R
d596288702198e51492833ce4cbe9b51 *R/rocJM.mvJMbayes.R
845fc402ca3149b13aaca7c10f2bf3d4 *R/rowMedians.R
73de933869519e4631899ffb1c8396bf *R/runDynPred.R
b07208a5ff6ff4dbe88770e469e24989 *R/slice.shape.R
38a8c80ac2ed5507072cf0babf9c5c77 *R/slice.tau.R
d9d7247468d9ef1cbd5c8c02b2c4f663 *R/smilyface.R
b62397b00cc092c45b5de84f6d5c89c3 *R/stdErr.R
c749b4dbb19aafc9892ce1b158117931 *R/summary.JMbayes.R
23699ea8d653215173083ad06368726c *R/survPriors.R
96791ab50d787ebbd4e393f0fcaf7473 *R/survfitJM.JMbayes.R
8175c76baa2bda8517e8902e14fbad3d *R/survfitJM.R
d16212afd0ef6ac723f2034b01ae08ea *R/survfitJM.mvJMbayes.R
e912b789053da5cec99e5607175af425 *R/survivalFun.R
560d77149fd33768e8650a91c09927ce *R/td_effect.R
b47c9283f18854e12f1d0ccd32859519 *R/trimAboveMean.R
1a644b17c74303bf4154bb956efa54bc *R/update.JMbayes.R
7e432b2f981236bcefc6602a3658b94e *R/vcov.JMbayes.R
0ea6e2d05fbaffabad90918733b77db2 *R/xtable.JMbayes.R
2ddc4e4f9c28411513b9091c8d220d11 *README.md
b45a08564c6d113a6b133f8f8340a5c4 *data/aids.id.rda
0c91cfcab65d67a057f0901de1b8a9f9 *data/aids.rda
3f16a58c30687354dd89c10258e604c4 *data/pbc2.id.rda
fdcb143258d4bc1d5b5ae502dbdb9a1b *data/pbc2.rda
16b173d39aa518a526f58f40cccfd5eb *data/prothro.rda
d5983a9ed02887996c1085a8615ba031 *data/prothros.rda
5390bcfc8e3adcce0df3fff87bbbf222 *demo/00Index
c9c7abe9bea00e452b3db54aa3196456 *demo/global.R
3a8ebb655dbcf194c277cb43ccb64c2b *demo/server.R
2fc770fb5163a8b3338410fe71a234d7 *demo/ui.R
9737513fe22f32a570450364654cb413 *inst/CITATION
df60c09fbf7267093d319221bb033fea *inst/NEWS
df5a9d92293da10970979f22cc8d408b *inst/doc/Dynamic_Predictions.html
177c7739544b8c45ad2aa571eec7cbb7 *inst/doc/Multivariate_Joint_Models.html
6e45ffb54eaddee1f751d1dab03b5545 *inst/shiny_app_JM/global.R
15db49206c48c6c7e2966fee453ec2d0 *inst/shiny_app_JM/server.R
8093b746bca35d1e89004309e90003b5 *inst/shiny_app_JM/ui.R
6e45ffb54eaddee1f751d1dab03b5545 *inst/shiny_app_lme/global.R
1558625cfac5ff39e78beea185226656 *inst/shiny_app_lme/server.R
4970226e7eed8c6c0f7ef9df07395051 *inst/shiny_app_lme/ui.R
1be65cdc2ee203b16f9976d0f277111e *man/DerivIntSplines.Rd
9354a98eff753f3c7308decd476bc327 *man/IndvPred.Rd
19fa95b37afce250cee1d146690b80d6 *man/JMbayes.Rd
1ac65f35fed5fdabc77f17ec9749a25a *man/JMbayesObject.Rd
a8d601aee1a4beb0c3fd47e4a9e68ee0 *man/aids.Rd
ce85b46d97fe4cbd74519a401ad8c6b7 *man/anova.Rd
cbc0d238f57d924194d5054798495576 *man/aucJM.Rd
41c269a86a080758fb0172f49055a125 *man/bma.combine.Rd
534c8b087bf1bee1d8b6818ae4e05a22 *man/coef.Rd
e56c3c044c3fe5a2b616eb6c61e827f3 *man/cvDCL.Rd
f9a910bd065558698401986e30017eef *man/dynCJM.Rd
a83db47854fab948f383895307dcf4ca *man/dynInfo.Rd
b7a4467bfde59e08a7d3d12da9fc28a8 *man/fitted.Rd
0fb6b1ab9ad9e39ba270b43742093e0b *man/gt.Rd
32e56bcef7332222b66facb0343492b0 *man/jointModelBayes.Rd
2a240248af80d21d8c7c1407c8fcd6d4 *man/logLik.Rd
4daee5f93d4166a1649803a148bb0c06 *man/marglogLik.Rd
6da97aee51840d76efc63d08bb83be0e *man/mvJointModelBayes.Rd
6cfe2de05fabcc4f84c68e3c8d7482e3 *man/mvglmer.Rd
e8974afafd109e02a44430fdbee24f92 *man/pbc.Rd
24f50e36ca63bcce4b1b2416b8868903 *man/plot-survfitJM.Rd
b749900c327647e77bd57e3c29e1d2e8 *man/plot.Rd
1d7fa75eea051061929e0170bc72ca7d *man/prederrJM.Rd
463f1efd85e7eb22cd18ddb8f11d24a1 *man/predict.Rd
fc08671715beac9808c4fd8ed275e057 *man/prothro.Rd
363ab89df06e73a7a00717844d3d8738 *man/ranef.Rd
b9f4af9af8f861187607463b5a1777e2 *man/runDynPred.Rd
ced64876909c01f907aafb3c2ad57f01 *man/survfitJM.Rd
0be844806a9d3d14d457ef48c51edf00 *man/tve.Rd
75d23a3efc69fb21c316e63566c79f15 *man/xtable.Rd
98b32b9e6e00c84620a8af0885324875 *src/Makevars
98b32b9e6e00c84620a8af0885324875 *src/Makevars.win
fa90b4217c144adced8396dbf2243713 *src/RcppExports.cpp
4dc4b15f6cfdc13209a89febd62af6db *src/fast_LAPRWM.cpp
01b3f019ec1431510818667bcdfc4ac5 *src/fast_dmvnorm.cpp
75b4fcf7937bc76065bb53592f16c056 *src/fast_logPost.cpp
d153d27e6898c1a92eac78ea044987d5 *src/fast_score.cpp
880064ba647624722bf44c38b43d9c71 *src/survfitJM_mvJMbayes.cpp
